miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14593 5' -55.5 NC_003521.1 + 1327 0.67 0.939346
Target:  5'- --cGUGG-CGCGGCuGUaUCGGUCCAa -3'
miRNA:   3'- ccaCAUCaGCGUCGuCA-AGCCGGGUc -5'
14593 5' -55.5 NC_003521.1 + 17505 0.67 0.939346
Target:  5'- ----cGGUCaCGGCGGUUccCGGCCCGGc -3'
miRNA:   3'- ccacaUCAGcGUCGUCAA--GCCGGGUC- -5'
14593 5' -55.5 NC_003521.1 + 30563 0.67 0.952155
Target:  5'- gGGUGUAGcccUCGgGGUAGggCaGGUCCAa -3'
miRNA:   3'- -CCACAUC---AGCgUCGUCaaG-CCGGGUc -5'
14593 5' -55.5 NC_003521.1 + 34947 0.67 0.934629
Target:  5'- --cGUAGUCGCGGCgcacgcagAGgUCGGCCa-- -3'
miRNA:   3'- ccaCAUCAGCGUCG--------UCaAGCCGGguc -5'
14593 5' -55.5 NC_003521.1 + 37384 0.66 0.972018
Target:  5'- cGGUGUucGagGCGGCGGgggcGCCCGGg -3'
miRNA:   3'- -CCACAu-CagCGUCGUCaagcCGGGUC- -5'
14593 5' -55.5 NC_003521.1 + 39146 0.67 0.948107
Target:  5'- cGUGUgcugccaccggcGG-CGCAGCucg-CGGCCCAGu -3'
miRNA:   3'- cCACA------------UCaGCGUCGucaaGCCGGGUC- -5'
14593 5' -55.5 NC_003521.1 + 50325 0.66 0.966211
Target:  5'- ----gGGagGCAGCGGguccUCGGCCCGu -3'
miRNA:   3'- ccacaUCagCGUCGUCa---AGCCGGGUc -5'
14593 5' -55.5 NC_003521.1 + 69137 0.67 0.955986
Target:  5'- cGGUG-GGUgGCAGCGGggCGGUgUAc -3'
miRNA:   3'- -CCACaUCAgCGUCGUCaaGCCGgGUc -5'
14593 5' -55.5 NC_003521.1 + 69441 0.7 0.821144
Target:  5'- cGGUGgAGUCGCAGguGcgcgaGGCgCAGg -3'
miRNA:   3'- -CCACaUCAGCGUCguCaag--CCGgGUC- -5'
14593 5' -55.5 NC_003521.1 + 74906 0.73 0.701904
Target:  5'- ----cGGUgGCGGCGGUggagUCGGCCCGGc -3'
miRNA:   3'- ccacaUCAgCGUCGUCA----AGCCGGGUC- -5'
14593 5' -55.5 NC_003521.1 + 84593 0.69 0.901584
Target:  5'- cGGUGUGGUCGacCAGCucGGcgUCGGUgacggCCAGg -3'
miRNA:   3'- -CCACAUCAGC--GUCG--UCa-AGCCG-----GGUC- -5'
14593 5' -55.5 NC_003521.1 + 89994 0.66 0.966211
Target:  5'- cGG-GUGG-CGCuGCGGggacacguuguUUCGGUCCAGc -3'
miRNA:   3'- -CCaCAUCaGCGuCGUC-----------AAGCCGGGUC- -5'
14593 5' -55.5 NC_003521.1 + 94387 0.66 0.968921
Target:  5'- aGGUGUGGggcauguuaUCGUAGCcgcgcaGGUUgacgcggCGGCCCAu -3'
miRNA:   3'- -CCACAUC---------AGCGUCG------UCAA-------GCCGGGUc -5'
14593 5' -55.5 NC_003521.1 + 95078 0.68 0.929686
Target:  5'- --gGUAGUCGC-GCAGg--GGCUCGGg -3'
miRNA:   3'- ccaCAUCAGCGuCGUCaagCCGGGUC- -5'
14593 5' -55.5 NC_003521.1 + 95423 0.66 0.972018
Target:  5'- aGGUGgGGUCGaugAGCA----GGCCCAGg -3'
miRNA:   3'- -CCACaUCAGCg--UCGUcaagCCGGGUC- -5'
14593 5' -55.5 NC_003521.1 + 96981 0.7 0.853117
Target:  5'- aGGcUGUAGUCGCAG-AGggCGGCgCGc -3'
miRNA:   3'- -CC-ACAUCAGCGUCgUCaaGCCGgGUc -5'
14593 5' -55.5 NC_003521.1 + 103218 0.66 0.96301
Target:  5'- uGGaUGaGGUCGcCGGcCAGgcggCGGCCCAa -3'
miRNA:   3'- -CC-ACaUCAGC-GUC-GUCaa--GCCGGGUc -5'
14593 5' -55.5 NC_003521.1 + 103449 0.67 0.939346
Target:  5'- ----aGGUCGCGGCGGUUgCGcGCCaCGGc -3'
miRNA:   3'- ccacaUCAGCGUCGUCAA-GC-CGG-GUC- -5'
14593 5' -55.5 NC_003521.1 + 104204 0.67 0.955986
Target:  5'- --cGUAG-CGCAGCGucUCGGCCUc- -3'
miRNA:   3'- ccaCAUCaGCGUCGUcaAGCCGGGuc -5'
14593 5' -55.5 NC_003521.1 + 107309 0.66 0.96301
Target:  5'- cGUGaGGUUGCgagaucgcuGGCAGUagGGCUCGGa -3'
miRNA:   3'- cCACaUCAGCG---------UCGUCAagCCGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.