miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14594 3' -55 NC_003521.1 + 34387 0.7 0.871603
Target:  5'- cCAGCagGUGGUggcgcucgggccaGGUGAGGAucagcuGgGCGUCGCg -3'
miRNA:   3'- -GUCG--CACCA-------------CCACUUCU------CgCGUAGCG- -5'
14594 3' -55 NC_003521.1 + 116896 0.7 0.87232
Target:  5'- uCGGCGccgcugcaacUGGUGGaGAAcAGCGCcgCGCg -3'
miRNA:   3'- -GUCGC----------ACCACCaCUUcUCGCGuaGCG- -5'
14594 3' -55 NC_003521.1 + 127229 0.7 0.878679
Target:  5'- uGGCGcGGUGGUccuccacGAAGAGCGgcuCGUCGg -3'
miRNA:   3'- gUCGCaCCACCA-------CUUCUCGC---GUAGCg -5'
14594 3' -55 NC_003521.1 + 221245 0.7 0.879375
Target:  5'- aCAGCagguggaccGUGGUGGUGAAGAccaccgaGCA-CGCg -3'
miRNA:   3'- -GUCG---------CACCACCACUUCUcg-----CGUaGCG- -5'
14594 3' -55 NC_003521.1 + 116464 0.69 0.901757
Target:  5'- gCGGcCGUGGUGGgacacguggcggcgaUGAAGAGCGUc-CGUg -3'
miRNA:   3'- -GUC-GCACCACC---------------ACUUCUCGCGuaGCG- -5'
14594 3' -55 NC_003521.1 + 240079 0.69 0.905443
Target:  5'- cCGGCGUGGggcuugcacgUGGUGggGuuGUGCA-CGUu -3'
miRNA:   3'- -GUCGCACC----------ACCACuuCu-CGCGUaGCG- -5'
14594 3' -55 NC_003521.1 + 156708 0.69 0.905443
Target:  5'- aGGUGcUGGccgGG-GAGGAGCGCAuguUCGUg -3'
miRNA:   3'- gUCGC-ACCa--CCaCUUCUCGCGU---AGCG- -5'
14594 3' -55 NC_003521.1 + 39852 0.69 0.905443
Target:  5'- cCGGCGUGGggcuugcacgUGGUGggGuuGUGCA-CGUu -3'
miRNA:   3'- -GUCGCACC----------ACCACuuCu-CGCGUaGCG- -5'
14594 3' -55 NC_003521.1 + 160336 0.69 0.911405
Target:  5'- gCGGCGcGGUGGccuccgucGucGAGgGCGUCGCc -3'
miRNA:   3'- -GUCGCaCCACCa-------CuuCUCgCGUAGCG- -5'
14594 3' -55 NC_003521.1 + 100417 0.69 0.911405
Target:  5'- uGGUGaUGGUGGUGAgaAGAaGCgGCggCGCu -3'
miRNA:   3'- gUCGC-ACCACCACU--UCU-CG-CGuaGCG- -5'
14594 3' -55 NC_003521.1 + 175404 0.68 0.91714
Target:  5'- cCGGCGcaGGUGGgucagGGAGGcGCGCGUCu- -3'
miRNA:   3'- -GUCGCa-CCACCa----CUUCU-CGCGUAGcg -5'
14594 3' -55 NC_003521.1 + 186626 0.68 0.922648
Target:  5'- gCGGCGgcGGUGGUGgcGgcaAGuCGaCGUCGCg -3'
miRNA:   3'- -GUCGCa-CCACCACuuC---UC-GC-GUAGCG- -5'
14594 3' -55 NC_003521.1 + 76419 0.68 0.927926
Target:  5'- gCGGUGUGGUGGUGcu-GGCGaccguuGUCGUu -3'
miRNA:   3'- -GUCGCACCACCACuucUCGCg-----UAGCG- -5'
14594 3' -55 NC_003521.1 + 207493 0.68 0.927926
Target:  5'- uGGaCGaGGUGGUGGAGAGCaccugguucaaGCAcaccuUCGCc -3'
miRNA:   3'- gUC-GCaCCACCACUUCUCG-----------CGU-----AGCG- -5'
14594 3' -55 NC_003521.1 + 164740 0.68 0.927926
Target:  5'- cCAGCGc---GG-GAGGGGgGCAUCGCg -3'
miRNA:   3'- -GUCGCaccaCCaCUUCUCgCGUAGCG- -5'
14594 3' -55 NC_003521.1 + 139149 0.68 0.93248
Target:  5'- -cGUGUGGgaucUGGUGAagguggaGGAGCcgGUGUCGCg -3'
miRNA:   3'- guCGCACC----ACCACU-------UCUCG--CGUAGCG- -5'
14594 3' -55 NC_003521.1 + 31034 0.68 0.932975
Target:  5'- --uCGUGGUGGUGggGGGUGgGaggaccaCGCu -3'
miRNA:   3'- gucGCACCACCACuuCUCGCgUa------GCG- -5'
14594 3' -55 NC_003521.1 + 170878 0.68 0.937795
Target:  5'- gGGCGcgGGUGGUcAGGcGUccgGCGUCGCg -3'
miRNA:   3'- gUCGCa-CCACCAcUUCuCG---CGUAGCG- -5'
14594 3' -55 NC_003521.1 + 19151 0.68 0.937795
Target:  5'- aCGGCGUGGUGaccGAGAGCaCggCGCu -3'
miRNA:   3'- -GUCGCACCACcacUUCUCGcGuaGCG- -5'
14594 3' -55 NC_003521.1 + 193305 0.68 0.937795
Target:  5'- uCGGCGcgggGGUGGUGGgcacggugGGGGUG-GUCGCc -3'
miRNA:   3'- -GUCGCa---CCACCACU--------UCUCGCgUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.