miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14594 3' -55 NC_003521.1 + 214320 1.12 0.0036
Target:  5'- gCAGCGUGGUGGUGAAGAGCGCAUCGCg -3'
miRNA:   3'- -GUCGCACCACCACUUCUCGCGUAGCG- -5'
14594 3' -55 NC_003521.1 + 124097 0.83 0.234195
Target:  5'- aCGGCGUGGgcGG-GAAGcAGCGCGUCGCu -3'
miRNA:   3'- -GUCGCACCa-CCaCUUC-UCGCGUAGCG- -5'
14594 3' -55 NC_003521.1 + 28481 0.77 0.518597
Target:  5'- cCAGCG-GGUGGUGAuGGGCGUgaccGUCGg -3'
miRNA:   3'- -GUCGCaCCACCACUuCUCGCG----UAGCg -5'
14594 3' -55 NC_003521.1 + 52131 0.75 0.617088
Target:  5'- -cGcCGUGGUGG--GAGGGUGCAUCGUa -3'
miRNA:   3'- guC-GCACCACCacUUCUCGCGUAGCG- -5'
14594 3' -55 NC_003521.1 + 103974 0.74 0.647143
Target:  5'- aCAGCGcaggcccagGGUGGUGAAGAcgGCGUAguacaugCGCa -3'
miRNA:   3'- -GUCGCa--------CCACCACUUCU--CGCGUa------GCG- -5'
14594 3' -55 NC_003521.1 + 171229 0.73 0.696898
Target:  5'- uCAGCG-GGUGGUcAAGcAGCGCGUCu- -3'
miRNA:   3'- -GUCGCaCCACCAcUUC-UCGCGUAGcg -5'
14594 3' -55 NC_003521.1 + 95124 0.73 0.726193
Target:  5'- gAGCGUGGccuUGAAGAGCuccGCGUCGUg -3'
miRNA:   3'- gUCGCACCaccACUUCUCG---CGUAGCG- -5'
14594 3' -55 NC_003521.1 + 155240 0.72 0.745348
Target:  5'- gAGUccgugGUGGUGGUGggGGGCgGCGgcggcggCGCc -3'
miRNA:   3'- gUCG-----CACCACCACuuCUCG-CGUa------GCG- -5'
14594 3' -55 NC_003521.1 + 7571 0.72 0.764123
Target:  5'- gCAGCGUGGguacGGUGAcGAGUGaCGUaGCa -3'
miRNA:   3'- -GUCGCACCa---CCACUuCUCGC-GUAgCG- -5'
14594 3' -55 NC_003521.1 + 74632 0.72 0.791422
Target:  5'- aCAGCGgGGUGGUGcgcgggacccuGGAGCGC--CGCu -3'
miRNA:   3'- -GUCGCaCCACCACu----------UCUCGCGuaGCG- -5'
14594 3' -55 NC_003521.1 + 220511 0.72 0.791422
Target:  5'- gCAGCGUGGUGGccuccuGGuGCuGCAUgGCg -3'
miRNA:   3'- -GUCGCACCACCacu---UCuCG-CGUAgCG- -5'
14594 3' -55 NC_003521.1 + 128263 0.71 0.800258
Target:  5'- aGGcCGUGGUGGgc---AGCGCGUUGCg -3'
miRNA:   3'- gUC-GCACCACCacuucUCGCGUAGCG- -5'
14594 3' -55 NC_003521.1 + 54929 0.71 0.803752
Target:  5'- cCGGCGUgggcagaaaagugacGGUGGUGuucuccuuGAGCGCAcggaugacagaUCGCa -3'
miRNA:   3'- -GUCGCA---------------CCACCACuu------CUCGCGU-----------AGCG- -5'
14594 3' -55 NC_003521.1 + 17251 0.71 0.825858
Target:  5'- cCGGCGUcuucGGUGGaaGAGGAGCaGUAUCGg -3'
miRNA:   3'- -GUCGCA----CCACCa-CUUCUCG-CGUAGCg -5'
14594 3' -55 NC_003521.1 + 98959 0.71 0.83162
Target:  5'- gGGCcugGUGGcUGGUGAggcGGugccgggagccguaGGCGCGUCGCa -3'
miRNA:   3'- gUCG---CACC-ACCACU---UC--------------UCGCGUAGCG- -5'
14594 3' -55 NC_003521.1 + 235629 0.71 0.834064
Target:  5'- -cGCGUGGUGuuucaguuggGAGGGGUGCAcccUCGCc -3'
miRNA:   3'- guCGCACCACca--------CUUCUCGCGU---AGCG- -5'
14594 3' -55 NC_003521.1 + 113862 0.7 0.842093
Target:  5'- gAGCGUGGcGGUGGuguaAGCGCcgucacguGUCGCc -3'
miRNA:   3'- gUCGCACCaCCACUuc--UCGCG--------UAGCG- -5'
14594 3' -55 NC_003521.1 + 104679 0.7 0.849164
Target:  5'- cCAGCagGUGGUGGcGGcgcgccacgggguAGAGCGCcUCGUa -3'
miRNA:   3'- -GUCG--CACCACCaCU-------------UCUCGCGuAGCG- -5'
14594 3' -55 NC_003521.1 + 236441 0.7 0.84994
Target:  5'- gAGCG-GGUGaGUGAGcGAGCGgGaCGCg -3'
miRNA:   3'- gUCGCaCCAC-CACUU-CUCGCgUaGCG- -5'
14594 3' -55 NC_003521.1 + 204735 0.7 0.865059
Target:  5'- uGGCGagGGUGGUGAuGGAGgCGCcgcCGCc -3'
miRNA:   3'- gUCGCa-CCACCACU-UCUC-GCGua-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.