miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14594 3' -55 NC_003521.1 + 5462 0.66 0.968367
Target:  5'- cCAGa----UGGUGAAGAGCGCGU-GCg -3'
miRNA:   3'- -GUCgcaccACCACUUCUCGCGUAgCG- -5'
14594 3' -55 NC_003521.1 + 7571 0.72 0.764123
Target:  5'- gCAGCGUGGguacGGUGAcGAGUGaCGUaGCa -3'
miRNA:   3'- -GUCGCACCa---CCACUuCUCGC-GUAgCG- -5'
14594 3' -55 NC_003521.1 + 7703 0.65 0.97852
Target:  5'- uGGCGaagacacUGGggcucuuuuugGGUGggGAGgGCggCGCg -3'
miRNA:   3'- gUCGC-------ACCa----------CCACuuCUCgCGuaGCG- -5'
14594 3' -55 NC_003521.1 + 13602 0.67 0.962011
Target:  5'- uGGCGacgaGUGGaaUGggGGGCGCGagGCu -3'
miRNA:   3'- gUCGCac--CACC--ACuuCUCGCGUagCG- -5'
14594 3' -55 NC_003521.1 + 16551 0.67 0.958521
Target:  5'- -uGCGUGcaccugGGUGAGG-GCGCG-CGCc -3'
miRNA:   3'- guCGCACca----CCACUUCuCGCGUaGCG- -5'
14594 3' -55 NC_003521.1 + 17251 0.71 0.825858
Target:  5'- cCGGCGUcuucGGUGGaaGAGGAGCaGUAUCGg -3'
miRNA:   3'- -GUCGCA----CCACCa-CUUCUCG-CGUAGCg -5'
14594 3' -55 NC_003521.1 + 18963 0.65 0.978744
Target:  5'- cCAGCGacaacgaggagGG-GGUcGAGGAcGCGCcgCGCg -3'
miRNA:   3'- -GUCGCa----------CCaCCA-CUUCU-CGCGuaGCG- -5'
14594 3' -55 NC_003521.1 + 19151 0.68 0.937795
Target:  5'- aCGGCGUGGUGaccGAGAGCaCggCGCu -3'
miRNA:   3'- -GUCGCACCACcacUUCUCGcGuaGCG- -5'
14594 3' -55 NC_003521.1 + 19736 0.66 0.973929
Target:  5'- cCAGCGUGGcGGUGAc--G-GCGUCGg -3'
miRNA:   3'- -GUCGCACCaCCACUucuCgCGUAGCg -5'
14594 3' -55 NC_003521.1 + 28481 0.77 0.518597
Target:  5'- cCAGCG-GGUGGUGAuGGGCGUgaccGUCGg -3'
miRNA:   3'- -GUCGCaCCACCACUuCUCGCG----UAGCg -5'
14594 3' -55 NC_003521.1 + 31034 0.68 0.932975
Target:  5'- --uCGUGGUGGUGggGGGUGgGaggaccaCGCu -3'
miRNA:   3'- gucGCACCACCACuuCUCGCgUa------GCG- -5'
14594 3' -55 NC_003521.1 + 32507 0.67 0.95816
Target:  5'- aCAGuCGUccaGGUacucguaGGUGguGAGCGgAUCGCg -3'
miRNA:   3'- -GUC-GCA---CCA-------CCACuuCUCGCgUAGCG- -5'
14594 3' -55 NC_003521.1 + 34387 0.7 0.871603
Target:  5'- cCAGCagGUGGUggcgcucgggccaGGUGAGGAucagcuGgGCGUCGCg -3'
miRNA:   3'- -GUCG--CACCA-------------CCACUUCU------CgCGUAGCG- -5'
14594 3' -55 NC_003521.1 + 36701 0.66 0.976427
Target:  5'- cCGGCGccUGGcccgagcaGGUGGAG-GCGCAguggCGCc -3'
miRNA:   3'- -GUCGC--ACCa-------CCACUUCuCGCGUa---GCG- -5'
14594 3' -55 NC_003521.1 + 39852 0.69 0.905443
Target:  5'- cCGGCGUGGggcuugcacgUGGUGggGuuGUGCA-CGUu -3'
miRNA:   3'- -GUCGCACC----------ACCACuuCu-CGCGUaGCG- -5'
14594 3' -55 NC_003521.1 + 43111 0.67 0.946754
Target:  5'- --uUGUGGUGGUGguGGGCGUugacaGCg -3'
miRNA:   3'- gucGCACCACCACuuCUCGCGuag--CG- -5'
14594 3' -55 NC_003521.1 + 46025 0.67 0.958521
Target:  5'- uCAGaCGUGGggagGaGUGAGGGGCGCcaugaCGUu -3'
miRNA:   3'- -GUC-GCACCa---C-CACUUCUCGCGua---GCG- -5'
14594 3' -55 NC_003521.1 + 46173 0.67 0.958521
Target:  5'- -uGCGUGGgagUGGUGAuGGGCuGCAcggUGCu -3'
miRNA:   3'- guCGCACC---ACCACUuCUCG-CGUa--GCG- -5'
14594 3' -55 NC_003521.1 + 46390 0.66 0.973929
Target:  5'- gGGCGcggGGUGcGUGggGcGCGCGg-GCc -3'
miRNA:   3'- gUCGCa--CCAC-CACuuCuCGCGUagCG- -5'
14594 3' -55 NC_003521.1 + 49977 0.65 0.978744
Target:  5'- gCGGCG-GGUGGgucGAgGGAGCcGgGUCGUc -3'
miRNA:   3'- -GUCGCaCCACCa--CU-UCUCG-CgUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.