miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14594 3' -55 NC_003521.1 + 226309 0.67 0.950492
Target:  5'- gGGCGUGGUGucguUGAGGAacaagauGUGCAUgGUg -3'
miRNA:   3'- gUCGCACCACc---ACUUCU-------CGCGUAgCG- -5'
14594 3' -55 NC_003521.1 + 116464 0.69 0.901757
Target:  5'- gCGGcCGUGGUGGgacacguggcggcgaUGAAGAGCGUc-CGUg -3'
miRNA:   3'- -GUC-GCACCACC---------------ACUUCUCGCGuaGCG- -5'
14594 3' -55 NC_003521.1 + 240079 0.69 0.905443
Target:  5'- cCGGCGUGGggcuugcacgUGGUGggGuuGUGCA-CGUu -3'
miRNA:   3'- -GUCGCACC----------ACCACuuCu-CGCGUaGCG- -5'
14594 3' -55 NC_003521.1 + 100417 0.69 0.911405
Target:  5'- uGGUGaUGGUGGUGAgaAGAaGCgGCggCGCu -3'
miRNA:   3'- gUCGC-ACCACCACU--UCU-CG-CGuaGCG- -5'
14594 3' -55 NC_003521.1 + 164740 0.68 0.927926
Target:  5'- cCAGCGc---GG-GAGGGGgGCAUCGCg -3'
miRNA:   3'- -GUCGCaccaCCaCUUCUCgCGUAGCG- -5'
14594 3' -55 NC_003521.1 + 139149 0.68 0.93248
Target:  5'- -cGUGUGGgaucUGGUGAagguggaGGAGCcgGUGUCGCg -3'
miRNA:   3'- guCGCACC----ACCACU-------UCUCG--CGUAGCG- -5'
14594 3' -55 NC_003521.1 + 31034 0.68 0.932975
Target:  5'- --uCGUGGUGGUGggGGGUGgGaggaccaCGCu -3'
miRNA:   3'- gucGCACCACCACuuCUCGCgUa------GCG- -5'
14594 3' -55 NC_003521.1 + 193305 0.68 0.937795
Target:  5'- uCGGCGcgggGGUGGUGGgcacggugGGGGUG-GUCGCc -3'
miRNA:   3'- -GUCGCa---CCACCACU--------UCUCGCgUAGCG- -5'
14594 3' -55 NC_003521.1 + 19151 0.68 0.937795
Target:  5'- aCGGCGUGGUGaccGAGAGCaCggCGCu -3'
miRNA:   3'- -GUCGCACCACcacUUCUCGcGuaGCG- -5'
14594 3' -55 NC_003521.1 + 127229 0.7 0.878679
Target:  5'- uGGCGcGGUGGUccuccacGAAGAGCGgcuCGUCGg -3'
miRNA:   3'- gUCGCaCCACCA-------CUUCUCGC---GUAGCg -5'
14594 3' -55 NC_003521.1 + 34387 0.7 0.871603
Target:  5'- cCAGCagGUGGUggcgcucgggccaGGUGAGGAucagcuGgGCGUCGCg -3'
miRNA:   3'- -GUCG--CACCA-------------CCACUUCU------CgCGUAGCG- -5'
14594 3' -55 NC_003521.1 + 113862 0.7 0.842093
Target:  5'- gAGCGUGGcGGUGGuguaAGCGCcgucacguGUCGCc -3'
miRNA:   3'- gUCGCACCaCCACUuc--UCGCG--------UAGCG- -5'
14594 3' -55 NC_003521.1 + 124097 0.83 0.234195
Target:  5'- aCGGCGUGGgcGG-GAAGcAGCGCGUCGCu -3'
miRNA:   3'- -GUCGCACCa-CCaCUUC-UCGCGUAGCG- -5'
14594 3' -55 NC_003521.1 + 52131 0.75 0.617088
Target:  5'- -cGcCGUGGUGG--GAGGGUGCAUCGUa -3'
miRNA:   3'- guC-GCACCACCacUUCUCGCGUAGCG- -5'
14594 3' -55 NC_003521.1 + 74632 0.72 0.791422
Target:  5'- aCAGCGgGGUGGUGcgcgggacccuGGAGCGC--CGCu -3'
miRNA:   3'- -GUCGCaCCACCACu----------UCUCGCGuaGCG- -5'
14594 3' -55 NC_003521.1 + 220511 0.72 0.791422
Target:  5'- gCAGCGUGGUGGccuccuGGuGCuGCAUgGCg -3'
miRNA:   3'- -GUCGCACCACCacu---UCuCG-CGUAgCG- -5'
14594 3' -55 NC_003521.1 + 128263 0.71 0.800258
Target:  5'- aGGcCGUGGUGGgc---AGCGCGUUGCg -3'
miRNA:   3'- gUC-GCACCACCacuucUCGCGUAGCG- -5'
14594 3' -55 NC_003521.1 + 54929 0.71 0.803752
Target:  5'- cCGGCGUgggcagaaaagugacGGUGGUGuucuccuuGAGCGCAcggaugacagaUCGCa -3'
miRNA:   3'- -GUCGCA---------------CCACCACuu------CUCGCGU-----------AGCG- -5'
14594 3' -55 NC_003521.1 + 17251 0.71 0.825858
Target:  5'- cCGGCGUcuucGGUGGaaGAGGAGCaGUAUCGg -3'
miRNA:   3'- -GUCGCA----CCACCa-CUUCUCG-CGUAGCg -5'
14594 3' -55 NC_003521.1 + 235629 0.71 0.834064
Target:  5'- -cGCGUGGUGuuucaguuggGAGGGGUGCAcccUCGCc -3'
miRNA:   3'- guCGCACCACca--------CUUCUCGCGU---AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.