miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14597 3' -57.6 NC_003521.1 + 233724 0.71 0.744675
Target:  5'- gGCCUGGAgaaggaGGACGccGCCGCCgCGUcugcuucuucucaccGGGg -3'
miRNA:   3'- gUGGACCU------UCUGC--UGGCGGgGCA---------------UCC- -5'
14597 3' -57.6 NC_003521.1 + 168116 0.7 0.75836
Target:  5'- gGCgUGGAucgccgaGGACGACaGCgCCGUGGGu -3'
miRNA:   3'- gUGgACCU-------UCUGCUGgCGgGGCAUCC- -5'
14597 3' -57.6 NC_003521.1 + 11762 0.7 0.759265
Target:  5'- cCGCCUGGguGACuGCCuucguCCUCGUGGGg -3'
miRNA:   3'- -GUGGACCuuCUGcUGGc----GGGGCAUCC- -5'
14597 3' -57.6 NC_003521.1 + 170498 0.7 0.768254
Target:  5'- cCugCUGGAcGGCGucACCGCCUCGcugcUGGGc -3'
miRNA:   3'- -GugGACCUuCUGC--UGGCGGGGC----AUCC- -5'
14597 3' -57.6 NC_003521.1 + 171518 0.7 0.768254
Target:  5'- aGCgaGGAcGGCG-CCGCCCUGUgucGGGg -3'
miRNA:   3'- gUGgaCCUuCUGCuGGCGGGGCA---UCC- -5'
14597 3' -57.6 NC_003521.1 + 129659 0.7 0.785897
Target:  5'- uCGCCgGGgcGGCcgcgcuaugcgGACCGUCCCGUGGc -3'
miRNA:   3'- -GUGGaCCuuCUG-----------CUGGCGGGGCAUCc -5'
14597 3' -57.6 NC_003521.1 + 112061 0.7 0.794537
Target:  5'- cCugCUGGAGGACG-CCGCg--GUGGGg -3'
miRNA:   3'- -GugGACCUUCUGCuGGCGgggCAUCC- -5'
14597 3' -57.6 NC_003521.1 + 184792 0.69 0.803045
Target:  5'- gCGCCUGGAcgcccuGGugG-CCGCCUCcgacugGUGGGu -3'
miRNA:   3'- -GUGGACCU------UCugCuGGCGGGG------CAUCC- -5'
14597 3' -57.6 NC_003521.1 + 110535 0.69 0.803045
Target:  5'- uCugCUGGAAGGCgGGCCGaugcaCCUGUuccGGGu -3'
miRNA:   3'- -GugGACCUUCUG-CUGGCg----GGGCA---UCC- -5'
14597 3' -57.6 NC_003521.1 + 134055 0.69 0.811413
Target:  5'- aCGCCUGGGuuuCGACCGCCUgGgcgcccuGGa -3'
miRNA:   3'- -GUGGACCUucuGCUGGCGGGgCau-----CC- -5'
14597 3' -57.6 NC_003521.1 + 193235 0.69 0.811413
Target:  5'- aGCaggaGGAGGAcucCGACCGCCaCCGUGGc -3'
miRNA:   3'- gUGga--CCUUCU---GCUGGCGG-GGCAUCc -5'
14597 3' -57.6 NC_003521.1 + 63060 0.69 0.819636
Target:  5'- -cCCUGGc-GACGACCGCgacCCCGUAc- -3'
miRNA:   3'- guGGACCuuCUGCUGGCG---GGGCAUcc -5'
14597 3' -57.6 NC_003521.1 + 35097 0.69 0.819636
Target:  5'- uGCC-GGAuucgAGGCGGCCcgaGCCCCGUAa- -3'
miRNA:   3'- gUGGaCCU----UCUGCUGG---CGGGGCAUcc -5'
14597 3' -57.6 NC_003521.1 + 72133 0.69 0.819636
Target:  5'- uCACCUGaccGAGGACGGCCuGCCaCC--AGGg -3'
miRNA:   3'- -GUGGAC---CUUCUGCUGG-CGG-GGcaUCC- -5'
14597 3' -57.6 NC_003521.1 + 60156 0.69 0.827705
Target:  5'- aACCUGGuGGAUGucgUCGCCCCGgUAGc -3'
miRNA:   3'- gUGGACCuUCUGCu--GGCGGGGC-AUCc -5'
14597 3' -57.6 NC_003521.1 + 16933 0.69 0.827705
Target:  5'- uCACCaGGA--ACGACCGCCguuaCCGUcGGGg -3'
miRNA:   3'- -GUGGaCCUucUGCUGGCGG----GGCA-UCC- -5'
14597 3' -57.6 NC_003521.1 + 165056 0.69 0.827705
Target:  5'- gCACCUGG-AGGCGGCCuuucuGCCCuacagCGUcaAGGa -3'
miRNA:   3'- -GUGGACCuUCUGCUGG-----CGGG-----GCA--UCC- -5'
14597 3' -57.6 NC_003521.1 + 181295 0.69 0.835614
Target:  5'- aGCCgGGAAGAgaagcucaGGCCGCCCgCGggccAGGg -3'
miRNA:   3'- gUGGaCCUUCUg-------CUGGCGGG-GCa---UCC- -5'
14597 3' -57.6 NC_003521.1 + 118930 0.69 0.835614
Target:  5'- gGCgUGGgcGGCGG-CGUCCCGUcAGGg -3'
miRNA:   3'- gUGgACCuuCUGCUgGCGGGGCA-UCC- -5'
14597 3' -57.6 NC_003521.1 + 112032 0.69 0.843358
Target:  5'- gCGCCUGGuGGA-GGCCGCCaCCGa--- -3'
miRNA:   3'- -GUGGACCuUCUgCUGGCGG-GGCaucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.