miRNA display CGI


Results 21 - 40 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14600 5' -55.7 NC_003521.1 + 103449 0.72 0.739113
Target:  5'- ---aGGUCGCGGCGguugcgcgccACGgcGUAGGCGa -3'
miRNA:   3'- gccaCCAGCGCCGC----------UGCaaUAUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 162227 0.72 0.757783
Target:  5'- gGGUGGUagcgcCGaCGGCGcugGCGggGUGGGCGu -3'
miRNA:   3'- gCCACCA-----GC-GCCGC---UGCaaUAUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 49882 0.71 0.776037
Target:  5'- uGGcGGUCGUGGCGuGCGUgu--GGCGa -3'
miRNA:   3'- gCCaCCAGCGCCGC-UGCAauauCCGU- -5'
14600 5' -55.7 NC_003521.1 + 86697 0.71 0.776037
Target:  5'- uGGcgGGcCGCGGCGGCGacgacgAGGCGg -3'
miRNA:   3'- gCCa-CCaGCGCCGCUGCaaua--UCCGU- -5'
14600 5' -55.7 NC_003521.1 + 78134 0.71 0.781423
Target:  5'- uGGUGGgcgcguuaGCGGCGGCGgccgcgaacgAGGCAc -3'
miRNA:   3'- gCCACCag------CGCCGCUGCaaua------UCCGU- -5'
14600 5' -55.7 NC_003521.1 + 164219 0.71 0.784988
Target:  5'- gCGGUGGUaGCGGCGGCuggacgGUgg-AGGCu -3'
miRNA:   3'- -GCCACCAgCGCCGCUG------CAauaUCCGu -5'
14600 5' -55.7 NC_003521.1 + 88069 0.71 0.784988
Target:  5'- gCGGUGGUCgGCGGCGccCGUgaccacGGGCc -3'
miRNA:   3'- -GCCACCAG-CGCCGCu-GCAaua---UCCGu -5'
14600 5' -55.7 NC_003521.1 + 125715 0.71 0.784988
Target:  5'- cCGGcGGUCacgacggggGCGGCGACGgcgcaGGGCAg -3'
miRNA:   3'- -GCCaCCAG---------CGCCGCUGCaaua-UCCGU- -5'
14600 5' -55.7 NC_003521.1 + 122714 0.71 0.784988
Target:  5'- gGGcUGGagGCGGuCGugGUcGUGGGCGa -3'
miRNA:   3'- gCC-ACCagCGCC-GCugCAaUAUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 128012 0.71 0.784988
Target:  5'- cCGGggGGUCGCGGCcGucccagagcGCGUgcccGUAGGCGg -3'
miRNA:   3'- -GCCa-CCAGCGCCG-C---------UGCAa---UAUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 186632 0.71 0.793811
Target:  5'- gCGGUGGUgGCGGCaagucGACGUcgcgcGGCGg -3'
miRNA:   3'- -GCCACCAgCGCCG-----CUGCAauau-CCGU- -5'
14600 5' -55.7 NC_003521.1 + 50785 0.71 0.802497
Target:  5'- gCGGUccuGGUCGauCGGCGACGgugauGGCAg -3'
miRNA:   3'- -GCCA---CCAGC--GCCGCUGCaauauCCGU- -5'
14600 5' -55.7 NC_003521.1 + 87069 0.71 0.802497
Target:  5'- gGGUGGaagGCGGCGGCGUag-GGGUu -3'
miRNA:   3'- gCCACCag-CGCCGCUGCAauaUCCGu -5'
14600 5' -55.7 NC_003521.1 + 140551 0.71 0.811039
Target:  5'- gCGGUGGcugcUGCGGCGGCGgc---GGCGa -3'
miRNA:   3'- -GCCACCa---GCGCCGCUGCaauauCCGU- -5'
14600 5' -55.7 NC_003521.1 + 152210 0.71 0.819429
Target:  5'- cCGGacgaGGUCaCGGCGcACGUggcUGUGGGCAa -3'
miRNA:   3'- -GCCa---CCAGcGCCGC-UGCA---AUAUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 7728 0.71 0.819429
Target:  5'- gGGUGGggagggcggCGCGaGCGGCGg---AGGCGg -3'
miRNA:   3'- gCCACCa--------GCGC-CGCUGCaauaUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 83591 0.71 0.819429
Target:  5'- uGGUcGGaccUCGCGGCGGCGU-AUGacGGCGg -3'
miRNA:   3'- gCCA-CC---AGCGCCGCUGCAaUAU--CCGU- -5'
14600 5' -55.7 NC_003521.1 + 155253 0.7 0.827661
Target:  5'- uGGUGGgggGCGGCGGCGgc---GGCGc -3'
miRNA:   3'- gCCACCag-CGCCGCUGCaauauCCGU- -5'
14600 5' -55.7 NC_003521.1 + 50826 0.7 0.835726
Target:  5'- cCGGUGGUgggaGCGGUGACGgc---GGCu -3'
miRNA:   3'- -GCCACCAg---CGCCGCUGCaauauCCGu -5'
14600 5' -55.7 NC_003521.1 + 99380 0.7 0.851331
Target:  5'- uGGUGGUCGuCGGCGAagaugGUg--AGGUc -3'
miRNA:   3'- gCCACCAGC-GCCGCUg----CAauaUCCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.