miRNA display CGI


Results 1 - 20 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14600 5' -55.7 NC_003521.1 + 216676 1.08 0.006017
Target:  5'- gCGGUGGUCGCGGCGACGUUAUAGGCAc -3'
miRNA:   3'- -GCCACCAGCGCCGCUGCAAUAUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 186785 0.87 0.144682
Target:  5'- gCGGUGGUgGCGGCGGCGg---GGGCAa -3'
miRNA:   3'- -GCCACCAgCGCCGCUGCaauaUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 150564 0.78 0.433484
Target:  5'- gGGUGGUgGCGGCGGCGgc---GGCGc -3'
miRNA:   3'- gCCACCAgCGCCGCUGCaauauCCGU- -5'
14600 5' -55.7 NC_003521.1 + 104684 0.76 0.534138
Target:  5'- aGGUGGUgGCGGCGcgccACGggGUAGaGCGc -3'
miRNA:   3'- gCCACCAgCGCCGC----UGCaaUAUC-CGU- -5'
14600 5' -55.7 NC_003521.1 + 129207 0.76 0.534138
Target:  5'- uGGUGGUC-UGGCG-CGUgGUGGGCAg -3'
miRNA:   3'- gCCACCAGcGCCGCuGCAaUAUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 7977 0.76 0.543738
Target:  5'- cCGGgagGGUcCGCGGCGGCGggGgAGGUAc -3'
miRNA:   3'- -GCCa--CCA-GCGCCGCUGCaaUaUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 163197 0.75 0.57285
Target:  5'- aCGGUGGUgGCGGCGGCagc---GGCAg -3'
miRNA:   3'- -GCCACCAgCGCCGCUGcaauauCCGU- -5'
14600 5' -55.7 NC_003521.1 + 127407 0.74 0.631964
Target:  5'- gCGGUGGUCGUGcaGCG-CGUUcacGUAGGCc -3'
miRNA:   3'- -GCCACCAGCGC--CGCuGCAA---UAUCCGu -5'
14600 5' -55.7 NC_003521.1 + 209557 0.74 0.651742
Target:  5'- gCGG-GGUgGCGGCGACGgu---GGCGg -3'
miRNA:   3'- -GCCaCCAgCGCCGCUGCaauauCCGU- -5'
14600 5' -55.7 NC_003521.1 + 84757 0.74 0.661612
Target:  5'- uCGGgcgcGG-CgGCGGCGACGUUGUuGGCAc -3'
miRNA:   3'- -GCCa---CCaG-CGCCGCUGCAAUAuCCGU- -5'
14600 5' -55.7 NC_003521.1 + 172325 0.74 0.661612
Target:  5'- aGGccGGUCGCGGCGgACGggugagGGGCGg -3'
miRNA:   3'- gCCa-CCAGCGCCGC-UGCaaua--UCCGU- -5'
14600 5' -55.7 NC_003521.1 + 72845 0.73 0.671461
Target:  5'- aCGGccUGGg-GCGGCGACG--GUAGGCAc -3'
miRNA:   3'- -GCC--ACCagCGCCGCUGCaaUAUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 123174 0.73 0.68128
Target:  5'- aGGUGG-CgGCGGCGGCGggggaccGUAGGCc -3'
miRNA:   3'- gCCACCaG-CGCCGCUGCaa-----UAUCCGu -5'
14600 5' -55.7 NC_003521.1 + 196734 0.73 0.69106
Target:  5'- aCGGUGGUgGCGGCGGCGccu---GCAc -3'
miRNA:   3'- -GCCACCAgCGCCGCUGCaauaucCGU- -5'
14600 5' -55.7 NC_003521.1 + 126303 0.73 0.710477
Target:  5'- uGGUGccCGUGGCGGCG--GUGGGCAc -3'
miRNA:   3'- gCCACcaGCGCCGCUGCaaUAUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 69693 0.73 0.710477
Target:  5'- aCGGUGGUCcuggugucgGUGGCGGCGgcccugAGGUAc -3'
miRNA:   3'- -GCCACCAG---------CGCCGCUGCaaua--UCCGU- -5'
14600 5' -55.7 NC_003521.1 + 135749 0.73 0.720095
Target:  5'- gCGGUGGUgGCGGCGGUGggAUcgccccugGGGCu -3'
miRNA:   3'- -GCCACCAgCGCCGCUGCaaUA--------UCCGu -5'
14600 5' -55.7 NC_003521.1 + 76213 0.72 0.729644
Target:  5'- uGGUGGUaugaGUGGCGGCGgccgguGGCGu -3'
miRNA:   3'- gCCACCAg---CGCCGCUGCaauau-CCGU- -5'
14600 5' -55.7 NC_003521.1 + 69493 0.72 0.739113
Target:  5'- aCGGUGGUCGUagacGGCGcaggccGCGUUG-AGGCc -3'
miRNA:   3'- -GCCACCAGCG----CCGC------UGCAAUaUCCGu -5'
14600 5' -55.7 NC_003521.1 + 103449 0.72 0.739113
Target:  5'- ---aGGUCGCGGCGguugcgcgccACGgcGUAGGCGa -3'
miRNA:   3'- gccaCCAGCGCCGC----------UGCaaUAUCCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.