miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14600 5' -55.7 NC_003521.1 + 47 0.7 0.861815
Target:  5'- uCGGUGaGUcacggaaccgguuucCGCGGCGGCGUgc--GGCGg -3'
miRNA:   3'- -GCCAC-CA---------------GCGCCGCUGCAauauCCGU- -5'
14600 5' -55.7 NC_003521.1 + 6491 0.66 0.965013
Target:  5'- cCGGcagcGGagGCGGUGACGgcagAGGCu -3'
miRNA:   3'- -GCCa---CCagCGCCGCUGCaauaUCCGu -5'
14600 5' -55.7 NC_003521.1 + 7728 0.71 0.819429
Target:  5'- gGGUGGggagggcggCGCGaGCGGCGg---AGGCGg -3'
miRNA:   3'- gCCACCa--------GCGC-CGCUGCaauaUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 7977 0.76 0.543738
Target:  5'- cCGGgagGGUcCGCGGCGGCGggGgAGGUAc -3'
miRNA:   3'- -GCCa--CCA-GCGCCGCUGCaaUaUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 18734 0.66 0.965013
Target:  5'- gCGGcGGcgaUCGUGGCGGCGgu---GGCGc -3'
miRNA:   3'- -GCCaCC---AGCGCCGCUGCaauauCCGU- -5'
14600 5' -55.7 NC_003521.1 + 19940 0.66 0.965013
Target:  5'- aGGUGGgcgagaUCGUGGUGAgGUggccGGGCu -3'
miRNA:   3'- gCCACC------AGCGCCGCUgCAaua-UCCGu -5'
14600 5' -55.7 NC_003521.1 + 25570 0.67 0.95463
Target:  5'- aGGcGGcCGCGGgGACag-GUGGGCu -3'
miRNA:   3'- gCCaCCaGCGCCgCUGcaaUAUCCGu -5'
14600 5' -55.7 NC_003521.1 + 37383 0.69 0.899826
Target:  5'- gCGGUGuUCGaGGCGGCGg---GGGCGc -3'
miRNA:   3'- -GCCACcAGCgCCGCUGCaauaUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 38815 0.69 0.873332
Target:  5'- cCGGaccUGGUCGCGGCGcCGUguuccgAGGa- -3'
miRNA:   3'- -GCC---ACCAGCGCCGCuGCAaua---UCCgu -5'
14600 5' -55.7 NC_003521.1 + 39389 0.68 0.917436
Target:  5'- aCGGUaaGG-CGgGGCGAUGUUGgagccgaguuUGGGCGc -3'
miRNA:   3'- -GCCA--CCaGCgCCGCUGCAAU----------AUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 49882 0.71 0.776037
Target:  5'- uGGcGGUCGUGGCGuGCGUgu--GGCGa -3'
miRNA:   3'- gCCaCCAGCGCCGC-UGCAauauCCGU- -5'
14600 5' -55.7 NC_003521.1 + 50785 0.71 0.802497
Target:  5'- gCGGUccuGGUCGauCGGCGACGgugauGGCAg -3'
miRNA:   3'- -GCCA---CCAGC--GCCGCUGCaauauCCGU- -5'
14600 5' -55.7 NC_003521.1 + 50826 0.7 0.835726
Target:  5'- cCGGUGGUgggaGCGGUGACGgc---GGCu -3'
miRNA:   3'- -GCCACCAg---CGCCGCUGCaauauCCGu -5'
14600 5' -55.7 NC_003521.1 + 53355 0.66 0.961758
Target:  5'- ---cGG-CGCGGCGGCGgag-GGGCc -3'
miRNA:   3'- gccaCCaGCGCCGCUGCaauaUCCGu -5'
14600 5' -55.7 NC_003521.1 + 58993 0.68 0.933046
Target:  5'- uGGUGGU--CGGCGugGUag-AGGUAg -3'
miRNA:   3'- gCCACCAgcGCCGCugCAauaUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 69493 0.72 0.739113
Target:  5'- aCGGUGGUCGUagacGGCGcaggccGCGUUG-AGGCc -3'
miRNA:   3'- -GCCACCAGCG----CCGC------UGCAAUaUCCGu -5'
14600 5' -55.7 NC_003521.1 + 69693 0.73 0.710477
Target:  5'- aCGGUGGUCcuggugucgGUGGCGGCGgcccugAGGUAc -3'
miRNA:   3'- -GCCACCAG---------CGCCGCUGCaaua--UCCGU- -5'
14600 5' -55.7 NC_003521.1 + 72845 0.73 0.671461
Target:  5'- aCGGccUGGg-GCGGCGACG--GUAGGCAc -3'
miRNA:   3'- -GCC--ACCagCGCCGCUGCaaUAUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 76213 0.72 0.729644
Target:  5'- uGGUGGUaugaGUGGCGGCGgccgguGGCGu -3'
miRNA:   3'- gCCACCAg---CGCCGCUGCaauau-CCGU- -5'
14600 5' -55.7 NC_003521.1 + 76317 0.69 0.878898
Target:  5'- gCGGaGGUgGCGGCGACagcugcggAGGCGa -3'
miRNA:   3'- -GCCaCCAgCGCCGCUGcaaua---UCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.