miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14600 5' -55.7 NC_003521.1 + 239042 0.69 0.873332
Target:  5'- cCGGaccUGGUCGCGGCGcCGUguuccgAGGa- -3'
miRNA:   3'- -GCC---ACCAGCGCCGCuGCAaua---UCCgu -5'
14600 5' -55.7 NC_003521.1 + 88069 0.71 0.784988
Target:  5'- gCGGUGGUCgGCGGCGccCGUgaccacGGGCc -3'
miRNA:   3'- -GCCACCAG-CGCCGCu-GCAaua---UCCGu -5'
14600 5' -55.7 NC_003521.1 + 87069 0.71 0.802497
Target:  5'- gGGUGGaagGCGGCGGCGUag-GGGUu -3'
miRNA:   3'- gCCACCag-CGCCGCUGCAauaUCCGu -5'
14600 5' -55.7 NC_003521.1 + 99380 0.7 0.851331
Target:  5'- uGGUGGUCGuCGGCGAagaugGUg--AGGUc -3'
miRNA:   3'- gCCACCAGC-GCCGCUg----CAauaUCCGu -5'
14600 5' -55.7 NC_003521.1 + 122530 0.7 0.858858
Target:  5'- gGGUuGUUGCGGCGGCGUcccuagAGGUc -3'
miRNA:   3'- gCCAcCAGCGCCGCUGCAaua---UCCGu -5'
14600 5' -55.7 NC_003521.1 + 178686 0.7 0.858858
Target:  5'- gGGUGGUCGCGGCcGCuc---AGGUAc -3'
miRNA:   3'- gCCACCAGCGCCGcUGcaauaUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 200275 0.7 0.861815
Target:  5'- uCGGUGaGUcacggaaccgguuucCGCGGCGGCGUgc--GGCGg -3'
miRNA:   3'- -GCCAC-CA---------------GCGCCGCUGCAauauCCGU- -5'
14600 5' -55.7 NC_003521.1 + 81899 0.7 0.866193
Target:  5'- cCGGUGGagGUGGCGAagaaGUgAUAGGgGu -3'
miRNA:   3'- -GCCACCagCGCCGCUg---CAaUAUCCgU- -5'
14600 5' -55.7 NC_003521.1 + 100423 0.69 0.873332
Target:  5'- uGGUGGUgagaagaaGCGGCGGCGcUcgGGaGCAg -3'
miRNA:   3'- gCCACCAg-------CGCCGCUGCaAuaUC-CGU- -5'
14600 5' -55.7 NC_003521.1 + 78134 0.71 0.781423
Target:  5'- uGGUGGgcgcguuaGCGGCGGCGgccgcgaacgAGGCAc -3'
miRNA:   3'- gCCACCag------CGCCGCUGCaaua------UCCGU- -5'
14600 5' -55.7 NC_003521.1 + 49882 0.71 0.776037
Target:  5'- uGGcGGUCGUGGCGuGCGUgu--GGCGa -3'
miRNA:   3'- gCCaCCAGCGCCGC-UGCAauauCCGU- -5'
14600 5' -55.7 NC_003521.1 + 69493 0.72 0.739113
Target:  5'- aCGGUGGUCGUagacGGCGcaggccGCGUUG-AGGCc -3'
miRNA:   3'- -GCCACCAGCG----CCGC------UGCAAUaUCCGu -5'
14600 5' -55.7 NC_003521.1 + 150564 0.78 0.433484
Target:  5'- gGGUGGUgGCGGCGGCGgc---GGCGc -3'
miRNA:   3'- gCCACCAgCGCCGCUGCaauauCCGU- -5'
14600 5' -55.7 NC_003521.1 + 129207 0.76 0.534138
Target:  5'- uGGUGGUC-UGGCG-CGUgGUGGGCAg -3'
miRNA:   3'- gCCACCAGcGCCGCuGCAaUAUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 163197 0.75 0.57285
Target:  5'- aCGGUGGUgGCGGCGGCagc---GGCAg -3'
miRNA:   3'- -GCCACCAgCGCCGCUGcaauauCCGU- -5'
14600 5' -55.7 NC_003521.1 + 127407 0.74 0.631964
Target:  5'- gCGGUGGUCGUGcaGCG-CGUUcacGUAGGCc -3'
miRNA:   3'- -GCCACCAGCGC--CGCuGCAA---UAUCCGu -5'
14600 5' -55.7 NC_003521.1 + 209557 0.74 0.651742
Target:  5'- gCGG-GGUgGCGGCGACGgu---GGCGg -3'
miRNA:   3'- -GCCaCCAgCGCCGCUGCaauauCCGU- -5'
14600 5' -55.7 NC_003521.1 + 72845 0.73 0.671461
Target:  5'- aCGGccUGGg-GCGGCGACG--GUAGGCAc -3'
miRNA:   3'- -GCC--ACCagCGCCGCUGCaaUAUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 196734 0.73 0.69106
Target:  5'- aCGGUGGUgGCGGCGGCGccu---GCAc -3'
miRNA:   3'- -GCCACCAgCGCCGCUGCaauaucCGU- -5'
14600 5' -55.7 NC_003521.1 + 103449 0.72 0.739113
Target:  5'- ---aGGUCGCGGCGguugcgcgccACGgcGUAGGCGa -3'
miRNA:   3'- gccaCCAGCGCCGC----------UGCaaUAUCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.