miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14602 5' -52.6 NC_003521.1 + 198924 0.66 0.99294
Target:  5'- --aGGGCGUAGAggaugggGUUgAUGAgGCAGUg -3'
miRNA:   3'- caaCCUGCAUCUa------CGGgUACU-CGUCA- -5'
14602 5' -52.6 NC_003521.1 + 173413 0.66 0.991906
Target:  5'- cGUUGuuGACGaugucgcguUGGAUGCCCGUGGuCAGg -3'
miRNA:   3'- -CAAC--CUGC---------AUCUACGGGUACUcGUCa -5'
14602 5' -52.6 NC_003521.1 + 39042 0.66 0.990754
Target:  5'- -cUGGGCGUcuGGGUGCCCAgacGAaUAGg -3'
miRNA:   3'- caACCUGCA--UCUACGGGUa--CUcGUCa -5'
14602 5' -52.6 NC_003521.1 + 97581 0.66 0.990633
Target:  5'- -aUGGAgGUGGugaugacGUGCUCGUugGAGCAGg -3'
miRNA:   3'- caACCUgCAUC-------UACGGGUA--CUCGUCa -5'
14602 5' -52.6 NC_003521.1 + 104413 0.66 0.988068
Target:  5'- cUUGGA-GUAGAUGCCgAugaUGAGCuGa -3'
miRNA:   3'- cAACCUgCAUCUACGGgU---ACUCGuCa -5'
14602 5' -52.6 NC_003521.1 + 187057 0.67 0.986516
Target:  5'- --cGGGCGggaaGGGUGCCagcGAGCGGa -3'
miRNA:   3'- caaCCUGCa---UCUACGGguaCUCGUCa -5'
14602 5' -52.6 NC_003521.1 + 68120 0.67 0.980923
Target:  5'- -gUGGACGgAGAcGCCgUAcGAGCAGUg -3'
miRNA:   3'- caACCUGCaUCUaCGG-GUaCUCGUCA- -5'
14602 5' -52.6 NC_003521.1 + 214290 0.67 0.978719
Target:  5'- --aGGAgGccaGGAUGCCCAucaccacggUGAGCAGc -3'
miRNA:   3'- caaCCUgCa--UCUACGGGU---------ACUCGUCa -5'
14602 5' -52.6 NC_003521.1 + 166582 0.67 0.978719
Target:  5'- -gUGcuUGUAGAUGCCCGUGAcgcccaccugucGCAGg -3'
miRNA:   3'- caACcuGCAUCUACGGGUACU------------CGUCa -5'
14602 5' -52.6 NC_003521.1 + 36788 0.68 0.976332
Target:  5'- --cGGGCGUGGAggacgcGCCUuucGGGCAGg -3'
miRNA:   3'- caaCCUGCAUCUa-----CGGGua-CUCGUCa -5'
14602 5' -52.6 NC_003521.1 + 178800 0.68 0.976332
Target:  5'- --cGGGCGaGGcAUGCCCGgcGGGCGGg -3'
miRNA:   3'- caaCCUGCaUC-UACGGGUa-CUCGUCa -5'
14602 5' -52.6 NC_003521.1 + 127837 0.68 0.976332
Target:  5'- --gGGugGUAGuggcGCCCGccgcUGAGCGGc -3'
miRNA:   3'- caaCCugCAUCua--CGGGU----ACUCGUCa -5'
14602 5' -52.6 NC_003521.1 + 52777 0.68 0.973755
Target:  5'- --aGGAUGgAGAUGUCCAggcGGCGGUg -3'
miRNA:   3'- caaCCUGCaUCUACGGGUac-UCGUCA- -5'
14602 5' -52.6 NC_003521.1 + 148763 0.68 0.973755
Target:  5'- -aUGGAUcUGGGUGCCCuc-GGCGGUc -3'
miRNA:   3'- caACCUGcAUCUACGGGuacUCGUCA- -5'
14602 5' -52.6 NC_003521.1 + 103133 0.68 0.973755
Target:  5'- -cUGGugGggAGA-GCCCAgGGGCAGc -3'
miRNA:   3'- caACCugCa-UCUaCGGGUaCUCGUCa -5'
14602 5' -52.6 NC_003521.1 + 117845 0.68 0.97098
Target:  5'- --gGGACucaAGAUGCCCGUGA-CGGUc -3'
miRNA:   3'- caaCCUGca-UCUACGGGUACUcGUCA- -5'
14602 5' -52.6 NC_003521.1 + 165836 0.68 0.97098
Target:  5'- --aGGGCG-AGAUGUCCA--GGCAGg -3'
miRNA:   3'- caaCCUGCaUCUACGGGUacUCGUCa -5'
14602 5' -52.6 NC_003521.1 + 106218 0.68 0.97098
Target:  5'- --gGGAUGUAGAggcugaUGCCCAgcGAGguGg -3'
miRNA:   3'- caaCCUGCAUCU------ACGGGUa-CUCguCa -5'
14602 5' -52.6 NC_003521.1 + 18979 0.68 0.968
Target:  5'- -cUGGugGUGGAcGCCCAc-AGCGGc -3'
miRNA:   3'- caACCugCAUCUaCGGGUacUCGUCa -5'
14602 5' -52.6 NC_003521.1 + 113180 0.69 0.961402
Target:  5'- -aUGGGCcgcgAGGUGCCCGUcuucgugcacGAGCAGc -3'
miRNA:   3'- caACCUGca--UCUACGGGUA----------CUCGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.