miRNA display CGI


Results 41 - 60 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14605 3' -55.9 NC_003521.1 + 223102 0.69 0.849457
Target:  5'- cGUAGAUCUGCGggaugGCGGccgucucgcgcagcACCAGG-AGCc -3'
miRNA:   3'- -CAUCUGGGCGCa----CGUC--------------UGGUCCuUCG- -5'
14605 3' -55.9 NC_003521.1 + 175794 0.69 0.851766
Target:  5'- -cGGGgCUGCacGCGGGCCAGGAuGCg -3'
miRNA:   3'- caUCUgGGCGcaCGUCUGGUCCUuCG- -5'
14605 3' -55.9 NC_003521.1 + 152342 0.69 0.858592
Target:  5'- -cGGGCCCGCGccgacgcUGCucugGGGCCGGccGggGCg -3'
miRNA:   3'- caUCUGGGCGC-------ACG----UCUGGUC--CuuCG- -5'
14605 3' -55.9 NC_003521.1 + 216238 0.69 0.859341
Target:  5'- -gAGGCCUacgaGCGggagGUGGACgAGGAGGCc -3'
miRNA:   3'- caUCUGGG----CGCa---CGUCUGgUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 120538 0.69 0.859341
Target:  5'- -aGGGCCCucgGCGgccgGCGGuCCcgGGGGAGCg -3'
miRNA:   3'- caUCUGGG---CGCa---CGUCuGG--UCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 65035 0.69 0.859341
Target:  5'- --uGGCCCGCGUGCAGccCCGGcuaauGAcGCg -3'
miRNA:   3'- cauCUGGGCGCACGUCu-GGUC-----CUuCG- -5'
14605 3' -55.9 NC_003521.1 + 18649 0.69 0.86672
Target:  5'- cGUGGGgCCGCacggaccUGCuGGCCAcGGggGCg -3'
miRNA:   3'- -CAUCUgGGCGc------ACGuCUGGU-CCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 44056 0.69 0.86672
Target:  5'- ---cGCCCGCGgucgcGCcGGCCGGGGcAGCa -3'
miRNA:   3'- caucUGGGCGCa----CGuCUGGUCCU-UCG- -5'
14605 3' -55.9 NC_003521.1 + 181312 0.69 0.86672
Target:  5'- -cAGG-CCGCccGCGGGCCAGGgcGCc -3'
miRNA:   3'- caUCUgGGCGcaCGUCUGGUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 150358 0.69 0.86672
Target:  5'- -gAGGUCUGCGUGCGGACCGuGGucgacuGCu -3'
miRNA:   3'- caUCUGGGCGCACGUCUGGU-CCuu----CG- -5'
14605 3' -55.9 NC_003521.1 + 68175 0.69 0.86672
Target:  5'- ----cCCCaGCGcGCAGACCAagcGGggGCg -3'
miRNA:   3'- caucuGGG-CGCaCGUCUGGU---CCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 87704 0.69 0.873191
Target:  5'- -gAGGCCCGUGUuguagauGCAGACCcGGuugAGGUg -3'
miRNA:   3'- caUCUGGGCGCA-------CGUCUGGuCC---UUCG- -5'
14605 3' -55.9 NC_003521.1 + 49348 0.69 0.880873
Target:  5'- cGUcuGCgCGUGUGguGGCCgggugAGGAAGCg -3'
miRNA:   3'- -CAucUGgGCGCACguCUGG-----UCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 104803 0.69 0.880873
Target:  5'- -cGGAagcaCCGCGUGCAGGCguaCAGcGAGuGCa -3'
miRNA:   3'- caUCUg---GGCGCACGUCUG---GUC-CUU-CG- -5'
14605 3' -55.9 NC_003521.1 + 233365 0.69 0.880874
Target:  5'- cUGGAUCCGCGgaUGCGucGCCGGGAuccggAGCu -3'
miRNA:   3'- cAUCUGGGCGC--ACGUc-UGGUCCU-----UCG- -5'
14605 3' -55.9 NC_003521.1 + 213226 0.68 0.88697
Target:  5'- -gAGGCCCacguagaugagcaGCGagccGCGGACCAcgucGGAGGCg -3'
miRNA:   3'- caUCUGGG-------------CGCa---CGUCUGGU----CCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 215441 0.68 0.887637
Target:  5'- -cAGAgCCGCGggugcugGCgccAGGCCgAGGGAGCc -3'
miRNA:   3'- caUCUgGGCGCa------CG---UCUGG-UCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 92118 0.68 0.887637
Target:  5'- -cGGAaccCCCGgGUGCGGuuCGGGcGGCg -3'
miRNA:   3'- caUCU---GGGCgCACGUCugGUCCuUCG- -5'
14605 3' -55.9 NC_003521.1 + 113322 0.68 0.887637
Target:  5'- -cGGACCUGCuggGCcaAGacGCCGGGggGCu -3'
miRNA:   3'- caUCUGGGCGca-CG--UC--UGGUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 87631 0.68 0.887637
Target:  5'- -aGGugCCGCc-GCAGGCCucgcacaggcuGGAGGCg -3'
miRNA:   3'- caUCugGGCGcaCGUCUGGu----------CCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.