miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14607 3' -52.8 NC_003521.1 + 186910 0.67 0.989075
Target:  5'- cUGACGUCcaaggggggcgccgGUGgcgggggCGGCGGCGAacgcAACuCGAg -3'
miRNA:   3'- -ACUGCAG--------------UACa------GUCGCCGCU----UUG-GCU- -5'
14607 3' -52.8 NC_003521.1 + 7602 0.67 0.988662
Target:  5'- aUGACG-CAagcUGUaCGGUGGCGGcggacugucgggaacGACCGAc -3'
miRNA:   3'- -ACUGCaGU---ACA-GUCGCCGCU---------------UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 39542 0.67 0.988093
Target:  5'- cUGGCG-CAgGUCGGUGGCcccGAcGCCGGc -3'
miRNA:   3'- -ACUGCaGUaCAGUCGCCG---CUuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 100512 0.67 0.988093
Target:  5'- gGGCGUCGgacgGUgcaCGGUGGCGGgacAGCUGGg -3'
miRNA:   3'- aCUGCAGUa---CA---GUCGCCGCU---UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 239769 0.67 0.988093
Target:  5'- cUGGCG-CAgGUCGGUGGCcccGAcGCCGGc -3'
miRNA:   3'- -ACUGCaGUaCAGUCGCCG---CUuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 163698 0.67 0.988093
Target:  5'- cGGCGcCAa--CGGCGGCcacGAGGCCGAa -3'
miRNA:   3'- aCUGCaGUacaGUCGCCG---CUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 71391 0.67 0.986574
Target:  5'- cGACGcCGUcGUCcgcgugagcgaGGCGGCGGccCCGAa -3'
miRNA:   3'- aCUGCaGUA-CAG-----------UCGCCGCUuuGGCU- -5'
14607 3' -52.8 NC_003521.1 + 217326 0.67 0.98491
Target:  5'- aGAuCGUCAgcaCGGUGGCGGAcggcgGCCGGu -3'
miRNA:   3'- aCU-GCAGUacaGUCGCCGCUU-----UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 50486 0.67 0.98491
Target:  5'- cGGCGcgugccacagCGUGUCGGCGGCGGuggagaugguACCa- -3'
miRNA:   3'- aCUGCa---------GUACAGUCGCCGCUu---------UGGcu -5'
14607 3' -52.8 NC_003521.1 + 76497 0.67 0.983094
Target:  5'- gUGACGUa--GUCGGCcagaGCGGGACCGc -3'
miRNA:   3'- -ACUGCAguaCAGUCGc---CGCUUUGGCu -5'
14607 3' -52.8 NC_003521.1 + 171664 0.67 0.983094
Target:  5'- gGGCGUCGggagcGUCGGCGGCauga-CGAg -3'
miRNA:   3'- aCUGCAGUa----CAGUCGCCGcuuugGCU- -5'
14607 3' -52.8 NC_003521.1 + 68999 0.68 0.981117
Target:  5'- aGGCGUUcuUGUCGGCGaaGAGACuCGAc -3'
miRNA:   3'- aCUGCAGu-ACAGUCGCcgCUUUG-GCU- -5'
14607 3' -52.8 NC_003521.1 + 148206 0.68 0.981117
Target:  5'- aUGACGUCAgcgaucCGGCGAgGACCGGa -3'
miRNA:   3'- -ACUGCAGUacagucGCCGCU-UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 155248 0.68 0.981117
Target:  5'- gGugGUgGUGgggggcggCGGCGGCGgcGCCu- -3'
miRNA:   3'- aCugCAgUACa-------GUCGCCGCuuUGGcu -5'
14607 3' -52.8 NC_003521.1 + 43418 0.68 0.98091
Target:  5'- cGGCGUCGUggccagacacccaGUCccgGGCGGCG-AGCCa- -3'
miRNA:   3'- aCUGCAGUA-------------CAG---UCGCCGCuUUGGcu -5'
14607 3' -52.8 NC_003521.1 + 101482 0.68 0.978972
Target:  5'- gUGGCG-CGUGaggugcucgagCAGCGGCGGccagacgcGGCCGAc -3'
miRNA:   3'- -ACUGCaGUACa----------GUCGCCGCU--------UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 45541 0.68 0.978972
Target:  5'- gGGCGcCccGUCAGCGGCGG---CGAa -3'
miRNA:   3'- aCUGCaGuaCAGUCGCCGCUuugGCU- -5'
14607 3' -52.8 NC_003521.1 + 203022 0.68 0.978972
Target:  5'- aGACGg---GuUCGGCGGUGAuAGCCGGu -3'
miRNA:   3'- aCUGCaguaC-AGUCGCCGCU-UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 145855 0.68 0.976652
Target:  5'- -cGCGUCucUGggccCGGCGGCGGGcggcGCCGAc -3'
miRNA:   3'- acUGCAGu-ACa---GUCGCCGCUU----UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 203313 0.68 0.976652
Target:  5'- gGACGUCGcugaUGUCcGCGGgccCGAAaacGCCGGg -3'
miRNA:   3'- aCUGCAGU----ACAGuCGCC---GCUU---UGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.