miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14607 3' -52.8 NC_003521.1 + 198801 0.66 0.992884
Target:  5'- -uGCGUgGUGcCGGCGGCGucugucguGCCGc -3'
miRNA:   3'- acUGCAgUACaGUCGCCGCuu------UGGCu -5'
14607 3' -52.8 NC_003521.1 + 91628 0.66 0.992884
Target:  5'- gUGGCGuaguccUCGUGgccgcCGGUGGCGAcgcgcGCCGAg -3'
miRNA:   3'- -ACUGC------AGUACa----GUCGCCGCUu----UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 178856 0.66 0.992884
Target:  5'- cGACGggaaaGUCAGCGggcaguagaGCGAGGCCGc -3'
miRNA:   3'- aCUGCagua-CAGUCGC---------CGCUUUGGCu -5'
14607 3' -52.8 NC_003521.1 + 116391 0.66 0.992884
Target:  5'- cGACGUgGuggaacguugguUGgguagCGGCGGCGAuggcacGCCGAu -3'
miRNA:   3'- aCUGCAgU------------ACa----GUCGCCGCUu-----UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 1069 0.66 0.992884
Target:  5'- cGACcgacCA--UCGGCgGGCGAGGCCGAa -3'
miRNA:   3'- aCUGca--GUacAGUCG-CCGCUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 178175 0.66 0.992884
Target:  5'- gGGCGUCGUaGUagaaguuggaCAG-GGCGgcGCCGAa -3'
miRNA:   3'- aCUGCAGUA-CA----------GUCgCCGCuuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 236218 0.66 0.992589
Target:  5'- gUGAgGUCAUGUUcccccgcGCGGCccguuagcaaaccgGAGGCCGGc -3'
miRNA:   3'- -ACUgCAGUACAGu------CGCCG--------------CUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 142921 0.66 0.991863
Target:  5'- cGACGUCGgcguUGcagCAGCGGCGGucagggucAGCgGGg -3'
miRNA:   3'- aCUGCAGU----ACa--GUCGCCGCU--------UUGgCU- -5'
14607 3' -52.8 NC_003521.1 + 142213 0.66 0.991863
Target:  5'- cGACGU------GGCGGCaGAAGCCGAa -3'
miRNA:   3'- aCUGCAguacagUCGCCG-CUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 148809 0.66 0.991863
Target:  5'- gGACGuUCAUcGUgcGCGGCGAccgccugcccucGGCCGAg -3'
miRNA:   3'- aCUGC-AGUA-CAguCGCCGCU------------UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 138575 0.67 0.99073
Target:  5'- aGcAUGUCGUGUC-GCGGCaucucGCCGGa -3'
miRNA:   3'- aC-UGCAGUACAGuCGCCGcuu--UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 56241 0.67 0.99073
Target:  5'- cGAUGcCAUGUCGG-GGCuGAGgcagGCCGGc -3'
miRNA:   3'- aCUGCaGUACAGUCgCCG-CUU----UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 78135 0.67 0.99073
Target:  5'- gGugGgCGcGUUAGCGGCGGcGGCCGc -3'
miRNA:   3'- aCugCaGUaCAGUCGCCGCU-UUGGCu -5'
14607 3' -52.8 NC_003521.1 + 86248 0.67 0.989476
Target:  5'- uUGACGUgCAgggcgaaGUCGGcCGGCGAGG-CGAa -3'
miRNA:   3'- -ACUGCA-GUa------CAGUC-GCCGCUUUgGCU- -5'
14607 3' -52.8 NC_003521.1 + 50436 0.67 0.989476
Target:  5'- cGACaUCGcuccUCAGCGGUGGAcggaGCCGAa -3'
miRNA:   3'- aCUGcAGUac--AGUCGCCGCUU----UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 183800 0.67 0.989476
Target:  5'- gGGCGgCGUGUUcauccgcguGGCGGCGuccguGACCGc -3'
miRNA:   3'- aCUGCaGUACAG---------UCGCCGCu----UUGGCu -5'
14607 3' -52.8 NC_003521.1 + 46328 0.67 0.989476
Target:  5'- gGGCcaCAUGUgGGUGGCGAuGugCGAg -3'
miRNA:   3'- aCUGcaGUACAgUCGCCGCU-UugGCU- -5'
14607 3' -52.8 NC_003521.1 + 10560 0.67 0.989476
Target:  5'- cUGACGUCGUGggugucaguaaUCGGCGGCau--CCa- -3'
miRNA:   3'- -ACUGCAGUAC-----------AGUCGCCGcuuuGGcu -5'
14607 3' -52.8 NC_003521.1 + 130774 0.67 0.989476
Target:  5'- cUGACG-CugcUGUCGGCGGgGucACCGc -3'
miRNA:   3'- -ACUGCaGu--ACAGUCGCCgCuuUGGCu -5'
14607 3' -52.8 NC_003521.1 + 87457 0.67 0.98921
Target:  5'- cGACGUCcuUGgacucagcgcugUAGCGGCG--GCCGAa -3'
miRNA:   3'- aCUGCAGu-ACa-----------GUCGCCGCuuUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.