miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14607 3' -52.8 NC_003521.1 + 43418 0.68 0.98091
Target:  5'- cGGCGUCGUggccagacacccaGUCccgGGCGGCG-AGCCa- -3'
miRNA:   3'- aCUGCAGUA-------------CAG---UCGCCGCuUUGGcu -5'
14607 3' -52.8 NC_003521.1 + 45541 0.68 0.978972
Target:  5'- gGGCGcCccGUCAGCGGCGG---CGAa -3'
miRNA:   3'- aCUGCaGuaCAGUCGCCGCUuugGCU- -5'
14607 3' -52.8 NC_003521.1 + 46328 0.67 0.989476
Target:  5'- gGGCcaCAUGUgGGUGGCGAuGugCGAg -3'
miRNA:   3'- aCUGcaGUACAgUCGCCGCU-UugGCU- -5'
14607 3' -52.8 NC_003521.1 + 46642 0.75 0.762181
Target:  5'- aGACGgc--GUCGGCGGCGGGAUCGu -3'
miRNA:   3'- aCUGCaguaCAGUCGCCGCUUUGGCu -5'
14607 3' -52.8 NC_003521.1 + 50436 0.67 0.989476
Target:  5'- cGACaUCGcuccUCAGCGGUGGAcggaGCCGAa -3'
miRNA:   3'- aCUGcAGUac--AGUCGCCGCUU----UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 50486 0.67 0.98491
Target:  5'- cGGCGcgugccacagCGUGUCGGCGGCGGuggagaugguACCa- -3'
miRNA:   3'- aCUGCa---------GUACAGUCGCCGCUu---------UGGcu -5'
14607 3' -52.8 NC_003521.1 + 53334 0.73 0.8575
Target:  5'- gGAuCGUCGUGaccaccacgccggcgCGGCGGCGGAgggGCCGAc -3'
miRNA:   3'- aCU-GCAGUACa--------------GUCGCCGCUU---UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 54440 0.66 0.995347
Target:  5'- cUGACG-CGguUGUUGGCGGUGAAuuccagcucgcuGCCGu -3'
miRNA:   3'- -ACUGCaGU--ACAGUCGCCGCUU------------UGGCu -5'
14607 3' -52.8 NC_003521.1 + 56241 0.67 0.99073
Target:  5'- cGAUGcCAUGUCGG-GGCuGAGgcagGCCGGc -3'
miRNA:   3'- aCUGCaGUACAGUCgCCG-CUU----UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 61590 0.66 0.992884
Target:  5'- aGGCGcCAgaagGcCcGCGGCGGGACCa- -3'
miRNA:   3'- aCUGCaGUa---CaGuCGCCGCUUUGGcu -5'
14607 3' -52.8 NC_003521.1 + 65503 0.7 0.942421
Target:  5'- aGGCGaccuUCAucgagcgcUGUCAGCugGGCGAcGCCGAg -3'
miRNA:   3'- aCUGC----AGU--------ACAGUCG--CCGCUuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 68999 0.68 0.981117
Target:  5'- aGGCGUUcuUGUCGGCGaaGAGACuCGAc -3'
miRNA:   3'- aCUGCAGu-ACAGUCGCcgCUUUG-GCU- -5'
14607 3' -52.8 NC_003521.1 + 69695 0.72 0.885684
Target:  5'- gGugGUCcugGUGUCGGUGGCGGcGGCCc- -3'
miRNA:   3'- aCugCAG---UACAGUCGCCGCU-UUGGcu -5'
14607 3' -52.8 NC_003521.1 + 70349 0.69 0.954945
Target:  5'- gGGCGUUgagcuUGUCGGCGGgGuaGAGCCGc -3'
miRNA:   3'- aCUGCAGu----ACAGUCGCCgC--UUUGGCu -5'
14607 3' -52.8 NC_003521.1 + 71391 0.67 0.986574
Target:  5'- cGACGcCGUcGUCcgcgugagcgaGGCGGCGGccCCGAa -3'
miRNA:   3'- aCUGCaGUA-CAG-----------UCGCCGCUuuGGCU- -5'
14607 3' -52.8 NC_003521.1 + 72390 0.68 0.971177
Target:  5'- cGGCGUCcucGUCgaucaccAGCGGCGGAggcACUGAg -3'
miRNA:   3'- aCUGCAGua-CAG-------UCGCCGCUU---UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 73139 0.68 0.976652
Target:  5'- cGGCGggggCAg--CGGCGGCGgcGCCGc -3'
miRNA:   3'- aCUGCa---GUacaGUCGCCGCuuUGGCu -5'
14607 3' -52.8 NC_003521.1 + 74789 0.71 0.922501
Target:  5'- cGACGgcggCAgcggUAGCGGCGAGACgCGGa -3'
miRNA:   3'- aCUGCa---GUaca-GUCGCCGCUUUG-GCU- -5'
14607 3' -52.8 NC_003521.1 + 76497 0.67 0.983094
Target:  5'- gUGACGUa--GUCGGCcagaGCGGGACCGc -3'
miRNA:   3'- -ACUGCAguaCAGUCGc---CGCUUUGGCu -5'
14607 3' -52.8 NC_003521.1 + 76695 0.69 0.954945
Target:  5'- cGACGggucCGUG-UAGCGGUGgcACCGGc -3'
miRNA:   3'- aCUGCa---GUACaGUCGCCGCuuUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.