miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14607 3' -52.8 NC_003521.1 + 226164 0.66 0.993799
Target:  5'- cGGCGUCGU-UCAGCGcGCaGAAggGCCa- -3'
miRNA:   3'- aCUGCAGUAcAGUCGC-CG-CUU--UGGcu -5'
14607 3' -52.8 NC_003521.1 + 148809 0.66 0.991863
Target:  5'- gGACGuUCAUcGUgcGCGGCGAccgccugcccucGGCCGAg -3'
miRNA:   3'- aCUGC-AGUA-CAguCGCCGCU------------UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 28084 0.66 0.994618
Target:  5'- gGACGa-----CGGCGGgGAAGCCGAg -3'
miRNA:   3'- aCUGCaguacaGUCGCCgCUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 149739 0.66 0.994618
Target:  5'- cGACGaguggCAgGUCuucuGCGGCGAGGgCGGc -3'
miRNA:   3'- aCUGCa----GUaCAGu---CGCCGCUUUgGCU- -5'
14607 3' -52.8 NC_003521.1 + 140718 0.66 0.994695
Target:  5'- aGaACGUCAUcccgcgcgaguccucGUCGGCGGuCGAGgcgcccgccuccguGCCGGg -3'
miRNA:   3'- aC-UGCAGUA---------------CAGUCGCC-GCUU--------------UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 54440 0.66 0.995347
Target:  5'- cUGACG-CGguUGUUGGCGGUGAAuuccagcucgcuGCCGu -3'
miRNA:   3'- -ACUGCaGU--ACAGUCGCCGCUU------------UGGCu -5'
14607 3' -52.8 NC_003521.1 + 86315 0.66 0.995347
Target:  5'- gGGCGUgAUucuggcacGUCAGCcggguGGUGAGGCCGu -3'
miRNA:   3'- aCUGCAgUA--------CAGUCG-----CCGCUUUGGCu -5'
14607 3' -52.8 NC_003521.1 + 142921 0.66 0.991863
Target:  5'- cGACGUCGgcguUGcagCAGCGGCGGucagggucAGCgGGg -3'
miRNA:   3'- aCUGCAGU----ACa--GUCGCCGCU--------UUGgCU- -5'
14607 3' -52.8 NC_003521.1 + 168536 0.66 0.995347
Target:  5'- cUGGCGgcCAgcgCGGCGGCGgcGCUGGc -3'
miRNA:   3'- -ACUGCa-GUacaGUCGCCGCuuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 1069 0.66 0.992884
Target:  5'- cGACcgacCA--UCGGCgGGCGAGGCCGAa -3'
miRNA:   3'- aCUGca--GUacAGUCG-CCGCUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 100512 0.67 0.988093
Target:  5'- gGGCGUCGgacgGUgcaCGGUGGCGGgacAGCUGGg -3'
miRNA:   3'- aCUGCAGUa---CA---GUCGCCGCU---UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 56241 0.67 0.99073
Target:  5'- cGAUGcCAUGUCGG-GGCuGAGgcagGCCGGc -3'
miRNA:   3'- aCUGCaGUACAGUCgCCG-CUU----UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 78135 0.67 0.99073
Target:  5'- gGugGgCGcGUUAGCGGCGGcGGCCGc -3'
miRNA:   3'- aCugCaGUaCAGUCGCCGCU-UUGGCu -5'
14607 3' -52.8 NC_003521.1 + 71391 0.67 0.986574
Target:  5'- cGACGcCGUcGUCcgcgugagcgaGGCGGCGGccCCGAa -3'
miRNA:   3'- aCUGCaGUA-CAG-----------UCGCCGCUuuGGCU- -5'
14607 3' -52.8 NC_003521.1 + 217326 0.67 0.98491
Target:  5'- aGAuCGUCAgcaCGGUGGCGGAcggcgGCCGGu -3'
miRNA:   3'- aCU-GCAGUacaGUCGCCGCUU-----UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 76497 0.67 0.983094
Target:  5'- gUGACGUa--GUCGGCcagaGCGGGACCGc -3'
miRNA:   3'- -ACUGCAguaCAGUCGc---CGCUUUGGCu -5'
14607 3' -52.8 NC_003521.1 + 130774 0.67 0.989476
Target:  5'- cUGACG-CugcUGUCGGCGGgGucACCGc -3'
miRNA:   3'- -ACUGCaGu--ACAGUCGCCgCuuUGGCu -5'
14607 3' -52.8 NC_003521.1 + 186910 0.67 0.989075
Target:  5'- cUGACGUCcaaggggggcgccgGUGgcgggggCGGCGGCGAacgcAACuCGAg -3'
miRNA:   3'- -ACUGCAG--------------UACa------GUCGCCGCU----UUG-GCU- -5'
14607 3' -52.8 NC_003521.1 + 7602 0.67 0.988662
Target:  5'- aUGACG-CAagcUGUaCGGUGGCGGcggacugucgggaacGACCGAc -3'
miRNA:   3'- -ACUGCaGU---ACA-GUCGCCGCU---------------UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 39542 0.67 0.988093
Target:  5'- cUGGCG-CAgGUCGGUGGCcccGAcGCCGGc -3'
miRNA:   3'- -ACUGCaGUaCAGUCGCCG---CUuUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.