miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14607 3' -52.8 NC_003521.1 + 91628 0.66 0.992884
Target:  5'- gUGGCGuaguccUCGUGgccgcCGGUGGCGAcgcgcGCCGAg -3'
miRNA:   3'- -ACUGC------AGUACa----GUCGCCGCUu----UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 116391 0.66 0.992884
Target:  5'- cGACGUgGuggaacguugguUGgguagCGGCGGCGAuggcacGCCGAu -3'
miRNA:   3'- aCUGCAgU------------ACa----GUCGCCGCUu-----UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 178856 0.66 0.992884
Target:  5'- cGACGggaaaGUCAGCGggcaguagaGCGAGGCCGc -3'
miRNA:   3'- aCUGCagua-CAGUCGC---------CGCUUUGGCu -5'
14607 3' -52.8 NC_003521.1 + 123526 0.66 0.992884
Target:  5'- --cCGUCGUGgggCAGCGugaGgGGAGCCGGc -3'
miRNA:   3'- acuGCAGUACa--GUCGC---CgCUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 54440 0.66 0.995347
Target:  5'- cUGACG-CGguUGUUGGCGGUGAAuuccagcucgcuGCCGu -3'
miRNA:   3'- -ACUGCaGU--ACAGUCGCCGCUU------------UGGCu -5'
14607 3' -52.8 NC_003521.1 + 28084 0.66 0.994618
Target:  5'- gGACGa-----CGGCGGgGAAGCCGAg -3'
miRNA:   3'- aCUGCaguacaGUCGCCgCUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 86315 0.66 0.995347
Target:  5'- gGGCGUgAUucuggcacGUCAGCcggguGGUGAGGCCGu -3'
miRNA:   3'- aCUGCAgUA--------CAGUCG-----CCGCUUUGGCu -5'
14607 3' -52.8 NC_003521.1 + 226164 0.66 0.993799
Target:  5'- cGGCGUCGU-UCAGCGcGCaGAAggGCCa- -3'
miRNA:   3'- aCUGCAGUAcAGUCGC-CG-CUU--UGGcu -5'
14607 3' -52.8 NC_003521.1 + 168536 0.66 0.995347
Target:  5'- cUGGCGgcCAgcgCGGCGGCGgcGCUGGc -3'
miRNA:   3'- -ACUGCa-GUacaGUCGCCGCuuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 178175 0.66 0.992884
Target:  5'- gGGCGUCGUaGUagaaguuggaCAG-GGCGgcGCCGAa -3'
miRNA:   3'- aCUGCAGUA-CA----------GUCgCCGCuuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 132433 0.66 0.995347
Target:  5'- cGGgGUCggGUUAGCGuGCGgcGCCu- -3'
miRNA:   3'- aCUgCAGuaCAGUCGC-CGCuuUGGcu -5'
14607 3' -52.8 NC_003521.1 + 236218 0.66 0.992589
Target:  5'- gUGAgGUCAUGUUcccccgcGCGGCccguuagcaaaccgGAGGCCGGc -3'
miRNA:   3'- -ACUgCAGUACAGu------CGCCG--------------CUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 149739 0.66 0.994618
Target:  5'- cGACGaguggCAgGUCuucuGCGGCGAGGgCGGc -3'
miRNA:   3'- aCUGCa----GUaCAGu---CGCCGCUUUgGCU- -5'
14607 3' -52.8 NC_003521.1 + 142213 0.66 0.991863
Target:  5'- cGACGU------GGCGGCaGAAGCCGAa -3'
miRNA:   3'- aCUGCAguacagUCGCCG-CUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 61590 0.66 0.992884
Target:  5'- aGGCGcCAgaagGcCcGCGGCGGGACCa- -3'
miRNA:   3'- aCUGCaGUa---CaGuCGCCGCUUUGGcu -5'
14607 3' -52.8 NC_003521.1 + 140718 0.66 0.994695
Target:  5'- aGaACGUCAUcccgcgcgaguccucGUCGGCGGuCGAGgcgcccgccuccguGCCGGg -3'
miRNA:   3'- aC-UGCAGUA---------------CAGUCGCC-GCUU--------------UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 6081 0.66 0.992884
Target:  5'- cGACGgCcgGUgCGGCGGCGuu-CCGc -3'
miRNA:   3'- aCUGCaGuaCA-GUCGCCGCuuuGGCu -5'
14607 3' -52.8 NC_003521.1 + 17481 0.66 0.993799
Target:  5'- cGACGgcaCcgG-UAGCGGCGccGCCGGu -3'
miRNA:   3'- aCUGCa--GuaCaGUCGCCGCuuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 142921 0.66 0.991863
Target:  5'- cGACGUCGgcguUGcagCAGCGGCGGucagggucAGCgGGg -3'
miRNA:   3'- aCUGCAGU----ACa--GUCGCCGCU--------UUGgCU- -5'
14607 3' -52.8 NC_003521.1 + 148809 0.66 0.991863
Target:  5'- gGACGuUCAUcGUgcGCGGCGAccgccugcccucGGCCGAg -3'
miRNA:   3'- aCUGC-AGUA-CAguCGCCGCU------------UUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.