miRNA display CGI


Results 1 - 20 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14607 3' -52.8 NC_003521.1 + 1069 0.66 0.992884
Target:  5'- cGACcgacCA--UCGGCgGGCGAGGCCGAa -3'
miRNA:   3'- aCUGca--GUacAGUCG-CCGCUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 1827 0.69 0.968569
Target:  5'- cGACGUCuccUCAGCauGGCGGacgacaGACCGGg -3'
miRNA:   3'- aCUGCAGuacAGUCG--CCGCU------UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 6081 0.66 0.992884
Target:  5'- cGACGgCcgGUgCGGCGGCGuu-CCGc -3'
miRNA:   3'- aCUGCaGuaCA-GUCGCCGCuuuGGCu -5'
14607 3' -52.8 NC_003521.1 + 7602 0.67 0.988662
Target:  5'- aUGACG-CAagcUGUaCGGUGGCGGcggacugucgggaacGACCGAc -3'
miRNA:   3'- -ACUGCaGU---ACA-GUCGCCGCU---------------UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 10560 0.67 0.989476
Target:  5'- cUGACGUCGUGggugucaguaaUCGGCGGCau--CCa- -3'
miRNA:   3'- -ACUGCAGUAC-----------AGUCGCCGcuuuGGcu -5'
14607 3' -52.8 NC_003521.1 + 13450 0.75 0.752742
Target:  5'- gGACGUCAaGcgCAGCGGCGGuagcGCCGu -3'
miRNA:   3'- aCUGCAGUaCa-GUCGCCGCUu---UGGCu -5'
14607 3' -52.8 NC_003521.1 + 14433 0.68 0.973626
Target:  5'- gUGACGUgGUGcacacggcccugCGGCGGCGucAGCCGc -3'
miRNA:   3'- -ACUGCAgUACa-----------GUCGCCGCu-UUGGCu -5'
14607 3' -52.8 NC_003521.1 + 15338 0.7 0.932926
Target:  5'- cGAUGUCGUGUUAucGUGugauuGUGAGACCGAu -3'
miRNA:   3'- aCUGCAGUACAGU--CGC-----CGCUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 15513 0.66 0.992884
Target:  5'- cGGCGcUCggGUUGGCGGCGGcAugUGGc -3'
miRNA:   3'- aCUGC-AGuaCAGUCGCCGCU-UugGCU- -5'
14607 3' -52.8 NC_003521.1 + 16620 0.74 0.79784
Target:  5'- gGGCGUCAguaccgcuggcucUGUC-GCGGCGAccgcuuucgGGCCGAg -3'
miRNA:   3'- aCUGCAGU-------------ACAGuCGCCGCU---------UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 17134 0.7 0.937789
Target:  5'- gGACGUggacgaGUGguuccagCAGCGGCGcgAGGCCGAg -3'
miRNA:   3'- aCUGCAg-----UACa------GUCGCCGC--UUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 17481 0.66 0.993799
Target:  5'- cGACGgcaCcgG-UAGCGGCGccGCCGGu -3'
miRNA:   3'- aCUGCa--GuaCaGUCGCCGCuuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 18738 0.78 0.613696
Target:  5'- cGGCGaUCGUGgCGGCGGUGgcGCCGAc -3'
miRNA:   3'- aCUGC-AGUACaGUCGCCGCuuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 23527 0.7 0.950996
Target:  5'- cGugGUCAccacccUGUCGGUGGUGGuGGCCa- -3'
miRNA:   3'- aCugCAGU------ACAGUCGCCGCU-UUGGcu -5'
14607 3' -52.8 NC_003521.1 + 23827 0.7 0.942421
Target:  5'- cGACGUCucg-UGGCGG-GAGGCCGAc -3'
miRNA:   3'- aCUGCAGuacaGUCGCCgCUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 24331 0.73 0.841051
Target:  5'- cGACGaUCcgAUGaaUCGGCGGCGGGACCuGAa -3'
miRNA:   3'- aCUGC-AG--UAC--AGUCGCCGCUUUGG-CU- -5'
14607 3' -52.8 NC_003521.1 + 28084 0.66 0.994618
Target:  5'- gGACGa-----CGGCGGgGAAGCCGAg -3'
miRNA:   3'- aCUGCaguacaGUCGCCgCUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 31604 0.73 0.841051
Target:  5'- aGAUGUCGUccaccGUCAgGUGGCGGAugGCCGGu -3'
miRNA:   3'- aCUGCAGUA-----CAGU-CGCCGCUU--UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 34965 0.75 0.733561
Target:  5'- aGACGUCuuauUGUcCAGCGGCuggggcGAGCCGAa -3'
miRNA:   3'- aCUGCAGu---ACA-GUCGCCGc-----UUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 39542 0.67 0.988093
Target:  5'- cUGGCG-CAgGUCGGUGGCcccGAcGCCGGc -3'
miRNA:   3'- -ACUGCaGUaCAGUCGCCG---CUuUGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.