Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14607 | 3' | -52.8 | NC_003521.1 | + | 18738 | 0.78 | 0.613696 |
Target: 5'- cGGCGaUCGUGgCGGCGGUGgcGCCGAc -3' miRNA: 3'- aCUGC-AGUACaGUCGCCGCuuUGGCU- -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 72390 | 0.68 | 0.971177 |
Target: 5'- cGGCGUCcucGUCgaucaccAGCGGCGGAggcACUGAg -3' miRNA: 3'- aCUGCAGua-CAG-------UCGCCGCUU---UGGCU- -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 202054 | 0.69 | 0.968569 |
Target: 5'- cGACGUCuccUCAGCauGGCGGacgacaGACCGGg -3' miRNA: 3'- aCUGCAGuacAGUCG--CCGCU------UUGGCU- -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 233618 | 0.69 | 0.96827 |
Target: 5'- cGGCGggGUGcucgagggcaauuUCAGCGGCGgcGCCGu -3' miRNA: 3'- aCUGCagUAC-------------AGUCGCCGCuuUGGCu -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 88104 | 0.69 | 0.958672 |
Target: 5'- cGGCGaaguUCAUggaGUCGGCGGCcucguAAGCCGAa -3' miRNA: 3'- aCUGC----AGUA---CAGUCGCCGc----UUUGGCU- -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 76695 | 0.69 | 0.954945 |
Target: 5'- cGACGggucCGUG-UAGCGGUGgcACCGGc -3' miRNA: 3'- aCUGCa---GUACaGUCGCCGCuuUGGCU- -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 70349 | 0.69 | 0.954945 |
Target: 5'- gGGCGUUgagcuUGUCGGCGGgGuaGAGCCGc -3' miRNA: 3'- aCUGCAGu----ACAGUCGCCgC--UUUGGCu -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 130128 | 0.7 | 0.946822 |
Target: 5'- -uGCGUC--GUCGGCGGCGccGCCGc -3' miRNA: 3'- acUGCAGuaCAGUCGCCGCuuUGGCu -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 98920 | 0.7 | 0.946822 |
Target: 5'- gGGCGagUUGUGUCGGaucGCGGGACCGAg -3' miRNA: 3'- aCUGC--AGUACAGUCgc-CGCUUUGGCU- -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 65503 | 0.7 | 0.942421 |
Target: 5'- aGGCGaccuUCAucgagcgcUGUCAGCugGGCGAcGCCGAg -3' miRNA: 3'- aCUGC----AGU--------ACAGUCG--CCGCUuUGGCU- -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 15338 | 0.7 | 0.932926 |
Target: 5'- cGAUGUCGUGUUAucGUGugauuGUGAGACCGAu -3' miRNA: 3'- aCUGCAGUACAGU--CGC-----CGCUUUGGCU- -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 168475 | 0.71 | 0.927308 |
Target: 5'- gUGGCugGUCAgGUCgaucaugGGCGGCGAGACgGAg -3' miRNA: 3'- -ACUG--CAGUaCAG-------UCGCCGCUUUGgCU- -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 88061 | 0.71 | 0.922501 |
Target: 5'- aUGAgGUCGcggugGUCGGCGGCGcccguGACCa- -3' miRNA: 3'- -ACUgCAGUa----CAGUCGCCGCu----UUGGcu -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 74789 | 0.71 | 0.922501 |
Target: 5'- cGACGgcggCAgcggUAGCGGCGAGACgCGGa -3' miRNA: 3'- aCUGCa---GUaca-GUCGCCGCUUUG-GCU- -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 31604 | 0.73 | 0.841051 |
Target: 5'- aGAUGUCGUccaccGUCAgGUGGCGGAugGCCGGu -3' miRNA: 3'- aCUGCAGUA-----CAGU-CGCCGCUU--UGGCU- -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 24331 | 0.73 | 0.841051 |
Target: 5'- cGACGaUCcgAUGaaUCGGCGGCGGGACCuGAa -3' miRNA: 3'- aCUGC-AG--UAC--AGUCGCCGCUUUGG-CU- -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 127321 | 0.74 | 0.780714 |
Target: 5'- uUGGCGUUG-GUCAGCGGCu--GCCGGu -3' miRNA: 3'- -ACUGCAGUaCAGUCGCCGcuuUGGCU- -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 46642 | 0.75 | 0.762181 |
Target: 5'- aGACGgc--GUCGGCGGCGGGAUCGu -3' miRNA: 3'- aCUGCaguaCAGUCGCCGCUUUGGCu -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 139791 | 0.76 | 0.68426 |
Target: 5'- uUGGCGUCGcccucggCGGUGGCGAAGCCGc -3' miRNA: 3'- -ACUGCAGUaca----GUCGCCGCUUUGGCu -5' |
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14607 | 3' | -52.8 | NC_003521.1 | + | 218839 | 1.1 | 0.008867 |
Target: 5'- uUGACGUCAUGUCAGCGGCGAAACCGAa -3' miRNA: 3'- -ACUGCAGUACAGUCGCCGCUUUGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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