miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14607 3' -52.8 NC_003521.1 + 209729 0.68 0.971457
Target:  5'- gGAgGUCGUGcgCAGCGGCagccacGGcAGCCGGa -3'
miRNA:   3'- aCUgCAGUACa-GUCGCCG------CU-UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 98920 0.7 0.946822
Target:  5'- gGGCGagUUGUGUCGGaucGCGGGACCGAg -3'
miRNA:   3'- aCUGC--AGUACAGUCgc-CGCUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 130128 0.7 0.946822
Target:  5'- -uGCGUC--GUCGGCGGCGccGCCGc -3'
miRNA:   3'- acUGCAGuaCAGUCGCCGCuuUGGCu -5'
14607 3' -52.8 NC_003521.1 + 70349 0.69 0.954945
Target:  5'- gGGCGUUgagcuUGUCGGCGGgGuaGAGCCGc -3'
miRNA:   3'- aCUGCAGu----ACAGUCGCCgC--UUUGGCu -5'
14607 3' -52.8 NC_003521.1 + 76695 0.69 0.954945
Target:  5'- cGACGggucCGUG-UAGCGGUGgcACCGGc -3'
miRNA:   3'- aCUGCa---GUACaGUCGCCGCuuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 88104 0.69 0.958672
Target:  5'- cGGCGaaguUCAUggaGUCGGCGGCcucguAAGCCGAa -3'
miRNA:   3'- aCUGC----AGUA---CAGUCGCCGc----UUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 233618 0.69 0.96827
Target:  5'- cGGCGggGUGcucgagggcaauuUCAGCGGCGgcGCCGu -3'
miRNA:   3'- aCUGCagUAC-------------AGUCGCCGCuuUGGCu -5'
14607 3' -52.8 NC_003521.1 + 202054 0.69 0.968569
Target:  5'- cGACGUCuccUCAGCauGGCGGacgacaGACCGGg -3'
miRNA:   3'- aCUGCAGuacAGUCG--CCGCU------UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 72390 0.68 0.971177
Target:  5'- cGGCGUCcucGUCgaucaccAGCGGCGGAggcACUGAg -3'
miRNA:   3'- aCUGCAGua-CAG-------UCGCCGCUU---UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 65503 0.7 0.942421
Target:  5'- aGGCGaccuUCAucgagcgcUGUCAGCugGGCGAcGCCGAg -3'
miRNA:   3'- aCUGC----AGU--------ACAGUCG--CCGCUuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 15338 0.7 0.932926
Target:  5'- cGAUGUCGUGUUAucGUGugauuGUGAGACCGAu -3'
miRNA:   3'- aCUGCAGUACAGU--CGC-----CGCUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 168475 0.71 0.927308
Target:  5'- gUGGCugGUCAgGUCgaucaugGGCGGCGAGACgGAg -3'
miRNA:   3'- -ACUG--CAGUaCAG-------UCGCCGCUUUGgCU- -5'
14607 3' -52.8 NC_003521.1 + 18738 0.78 0.613696
Target:  5'- cGGCGaUCGUGgCGGCGGUGgcGCCGAc -3'
miRNA:   3'- aCUGC-AGUACaGUCGCCGCuuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 139791 0.76 0.68426
Target:  5'- uUGGCGUCGcccucggCGGUGGCGAAGCCGc -3'
miRNA:   3'- -ACUGCAGUaca----GUCGCCGCUUUGGCu -5'
14607 3' -52.8 NC_003521.1 + 46642 0.75 0.762181
Target:  5'- aGACGgc--GUCGGCGGCGGGAUCGu -3'
miRNA:   3'- aCUGCaguaCAGUCGCCGCUUUGGCu -5'
14607 3' -52.8 NC_003521.1 + 127321 0.74 0.780714
Target:  5'- uUGGCGUUG-GUCAGCGGCu--GCCGGu -3'
miRNA:   3'- -ACUGCAGUaCAGUCGCCGcuuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 24331 0.73 0.841051
Target:  5'- cGACGaUCcgAUGaaUCGGCGGCGGGACCuGAa -3'
miRNA:   3'- aCUGC-AG--UAC--AGUCGCCGCUUUGG-CU- -5'
14607 3' -52.8 NC_003521.1 + 31604 0.73 0.841051
Target:  5'- aGAUGUCGUccaccGUCAgGUGGCGGAugGCCGGu -3'
miRNA:   3'- aCUGCAGUA-----CAGU-CGCCGCUU--UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 74789 0.71 0.922501
Target:  5'- cGACGgcggCAgcggUAGCGGCGAGACgCGGa -3'
miRNA:   3'- aCUGCa---GUaca-GUCGCCGCUUUG-GCU- -5'
14607 3' -52.8 NC_003521.1 + 88061 0.71 0.922501
Target:  5'- aUGAgGUCGcggugGUCGGCGGCGcccguGACCa- -3'
miRNA:   3'- -ACUgCAGUa----CAGUCGCCGCu----UUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.