miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14607 3' -52.8 NC_003521.1 + 169279 0.76 0.713052
Target:  5'- cGGCGUCGUcuUCGGCGGCGGgcucggugacgucGGCCGGc -3'
miRNA:   3'- aCUGCAGUAc-AGUCGCCGCU-------------UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 110689 0.71 0.92783
Target:  5'- gUGGCGgCAg--CGGCGGCGccGCCGAc -3'
miRNA:   3'- -ACUGCaGUacaGUCGCCGCuuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 122728 0.7 0.932926
Target:  5'- cGugGUCGUGggCGaCGGCGccGCCGAu -3'
miRNA:   3'- aCugCAGUACa-GUcGCCGCuuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 132433 0.66 0.995347
Target:  5'- cGGgGUCggGUUAGCGuGCGgcGCCu- -3'
miRNA:   3'- aCUgCAGuaCAGUCGC-CGCuuUGGcu -5'
14607 3' -52.8 NC_003521.1 + 198384 0.75 0.771508
Target:  5'- cGGCGUUGUGgcgGGCGGCGAcuCCGGc -3'
miRNA:   3'- aCUGCAGUACag-UCGCCGCUuuGGCU- -5'
14607 3' -52.8 NC_003521.1 + 108032 0.74 0.780714
Target:  5'- cGGCGUCAgg-CGGCGGCGGgauGACgCGAc -3'
miRNA:   3'- aCUGCAGUacaGUCGCCGCU---UUG-GCU- -5'
14607 3' -52.8 NC_003521.1 + 109863 0.74 0.78979
Target:  5'- cGACGUgAcGggCGGCGGCGggGCCa- -3'
miRNA:   3'- aCUGCAgUaCa-GUCGCCGCuuUGGcu -5'
14607 3' -52.8 NC_003521.1 + 16620 0.74 0.79784
Target:  5'- gGGCGUCAguaccgcuggcucUGUC-GCGGCGAccgcuuucgGGCCGAg -3'
miRNA:   3'- aCUGCAGU-------------ACAGuCGCCGCU---------UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 69695 0.72 0.885684
Target:  5'- gGugGUCcugGUGUCGGUGGCGGcGGCCc- -3'
miRNA:   3'- aCugCAG---UACAGUCGCCGCU-UUGGcu -5'
14607 3' -52.8 NC_003521.1 + 209075 0.71 0.922501
Target:  5'- cGAUGUgCcgGUCgaGGCGGCGGAGgCGGu -3'
miRNA:   3'- aCUGCA-GuaCAG--UCGCCGCUUUgGCU- -5'
14607 3' -52.8 NC_003521.1 + 122659 0.71 0.905119
Target:  5'- gGGCGUCGUcugCGGCGGUGGGguggcgucGCCGGu -3'
miRNA:   3'- aCUGCAGUAca-GUCGCCGCUU--------UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 53334 0.73 0.8575
Target:  5'- gGAuCGUCGUGaccaccacgccggcgCGGCGGCGGAgggGCCGAc -3'
miRNA:   3'- aCU-GCAGUACa--------------GUCGCCGCUU---UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 34965 0.75 0.733561
Target:  5'- aGACGUCuuauUGUcCAGCGGCuggggcGAGCCGAa -3'
miRNA:   3'- aCUGCAGu---ACA-GUCGCCGc-----UUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 190542 0.71 0.911144
Target:  5'- cGGCGgCAg--CAGCGGCGGAcCCGGc -3'
miRNA:   3'- aCUGCaGUacaGUCGCCGCUUuGGCU- -5'
14607 3' -52.8 NC_003521.1 + 13450 0.75 0.752742
Target:  5'- gGACGUCAaGcgCAGCGGCGGuagcGCCGu -3'
miRNA:   3'- aCUGCAGUaCa-GUCGCCGCUu---UGGCu -5'
14607 3' -52.8 NC_003521.1 + 91342 0.74 0.798728
Target:  5'- cGGCGUC-UGUC--CGGCGAAGCCGc -3'
miRNA:   3'- aCUGCAGuACAGucGCCGCUUUGGCu -5'
14607 3' -52.8 NC_003521.1 + 90824 0.71 0.916939
Target:  5'- gUGGCGUC--GUCGuGCGGCGGGugCGc -3'
miRNA:   3'- -ACUGCAGuaCAGU-CGCCGCUUugGCu -5'
14607 3' -52.8 NC_003521.1 + 163309 0.7 0.932926
Target:  5'- cGGCGUgucCAcgGUCAGCGGCGcGAgCGGc -3'
miRNA:   3'- aCUGCA---GUa-CAGUCGCCGCuUUgGCU- -5'
14607 3' -52.8 NC_003521.1 + 95813 0.75 0.752742
Target:  5'- -cGCGUCGgcgaUGUCGGCGcGCGAGGCCu- -3'
miRNA:   3'- acUGCAGU----ACAGUCGC-CGCUUUGGcu -5'
14607 3' -52.8 NC_003521.1 + 172302 0.74 0.78979
Target:  5'- cGcCGUCcgGUGUCGGUGGCGccAGGCCGGu -3'
miRNA:   3'- aCuGCAG--UACAGUCGCCGC--UUUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.