miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14607 3' -52.8 NC_003521.1 + 218839 1.1 0.008867
Target:  5'- uUGACGUCAUGUCAGCGGCGAAACCGAa -3'
miRNA:   3'- -ACUGCAGUACAGUCGCCGCUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 18738 0.78 0.613696
Target:  5'- cGGCGaUCGUGgCGGCGGUGgcGCCGAc -3'
miRNA:   3'- aCUGC-AGUACaGUCGCCGCuuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 139791 0.76 0.68426
Target:  5'- uUGGCGUCGcccucggCGGUGGCGAAGCCGc -3'
miRNA:   3'- -ACUGCAGUaca----GUCGCCGCUUUGGCu -5'
14607 3' -52.8 NC_003521.1 + 169279 0.76 0.713052
Target:  5'- cGGCGUCGUcuUCGGCGGCGGgcucggugacgucGGCCGGc -3'
miRNA:   3'- aCUGCAGUAc-AGUCGCCGCU-------------UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 34965 0.75 0.733561
Target:  5'- aGACGUCuuauUGUcCAGCGGCuggggcGAGCCGAa -3'
miRNA:   3'- aCUGCAGu---ACA-GUCGCCGc-----UUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 13450 0.75 0.752742
Target:  5'- gGACGUCAaGcgCAGCGGCGGuagcGCCGu -3'
miRNA:   3'- aCUGCAGUaCa-GUCGCCGCUu---UGGCu -5'
14607 3' -52.8 NC_003521.1 + 95813 0.75 0.752742
Target:  5'- -cGCGUCGgcgaUGUCGGCGcGCGAGGCCu- -3'
miRNA:   3'- acUGCAGU----ACAGUCGC-CGCUUUGGcu -5'
14607 3' -52.8 NC_003521.1 + 46642 0.75 0.762181
Target:  5'- aGACGgc--GUCGGCGGCGGGAUCGu -3'
miRNA:   3'- aCUGCaguaCAGUCGCCGCUUUGGCu -5'
14607 3' -52.8 NC_003521.1 + 198384 0.75 0.771508
Target:  5'- cGGCGUUGUGgcgGGCGGCGAcuCCGGc -3'
miRNA:   3'- aCUGCAGUACag-UCGCCGCUuuGGCU- -5'
14607 3' -52.8 NC_003521.1 + 108032 0.74 0.780714
Target:  5'- cGGCGUCAgg-CGGCGGCGGgauGACgCGAc -3'
miRNA:   3'- aCUGCAGUacaGUCGCCGCU---UUG-GCU- -5'
14607 3' -52.8 NC_003521.1 + 127321 0.74 0.780714
Target:  5'- uUGGCGUUG-GUCAGCGGCu--GCCGGu -3'
miRNA:   3'- -ACUGCAGUaCAGUCGCCGcuuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 172302 0.74 0.78979
Target:  5'- cGcCGUCcgGUGUCGGUGGCGccAGGCCGGu -3'
miRNA:   3'- aCuGCAG--UACAGUCGCCGC--UUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 109863 0.74 0.78979
Target:  5'- cGACGUgAcGggCGGCGGCGggGCCa- -3'
miRNA:   3'- aCUGCAgUaCa-GUCGCCGCuuUGGcu -5'
14607 3' -52.8 NC_003521.1 + 16620 0.74 0.79784
Target:  5'- gGGCGUCAguaccgcuggcucUGUC-GCGGCGAccgcuuucgGGCCGAg -3'
miRNA:   3'- aCUGCAGU-------------ACAGuCGCCGCU---------UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 91342 0.74 0.798728
Target:  5'- cGGCGUC-UGUC--CGGCGAAGCCGc -3'
miRNA:   3'- aCUGCAGuACAGucGCCGCUUUGGCu -5'
14607 3' -52.8 NC_003521.1 + 31604 0.73 0.841051
Target:  5'- aGAUGUCGUccaccGUCAgGUGGCGGAugGCCGGu -3'
miRNA:   3'- aCUGCAGUA-----CAGU-CGCCGCUU--UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 24331 0.73 0.841051
Target:  5'- cGACGaUCcgAUGaaUCGGCGGCGGGACCuGAa -3'
miRNA:   3'- aCUGC-AG--UAC--AGUCGCCGCUUUGG-CU- -5'
14607 3' -52.8 NC_003521.1 + 53334 0.73 0.8575
Target:  5'- gGAuCGUCGUGaccaccacgccggcgCGGCGGCGGAgggGCCGAc -3'
miRNA:   3'- aCU-GCAGUACa--------------GUCGCCGCUU---UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 69695 0.72 0.885684
Target:  5'- gGugGUCcugGUGUCGGUGGCGGcGGCCc- -3'
miRNA:   3'- aCugCAG---UACAGUCGCCGCU-UUGGcu -5'
14607 3' -52.8 NC_003521.1 + 186650 0.71 0.898866
Target:  5'- cGACGUCGcGcggCGGUGGCGGAGgCGGc -3'
miRNA:   3'- aCUGCAGUaCa--GUCGCCGCUUUgGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.