miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14607 3' -52.8 NC_003521.1 + 122659 0.71 0.905119
Target:  5'- gGGCGUCGUcugCGGCGGUGGGguggcgucGCCGGu -3'
miRNA:   3'- aCUGCAGUAca-GUCGCCGCUU--------UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 190542 0.71 0.911144
Target:  5'- cGGCGgCAg--CAGCGGCGGAcCCGGc -3'
miRNA:   3'- aCUGCaGUacaGUCGCCGCUUuGGCU- -5'
14607 3' -52.8 NC_003521.1 + 90824 0.71 0.916939
Target:  5'- gUGGCGUC--GUCGuGCGGCGGGugCGc -3'
miRNA:   3'- -ACUGCAGuaCAGU-CGCCGCUUugGCu -5'
14607 3' -52.8 NC_003521.1 + 209075 0.71 0.922501
Target:  5'- cGAUGUgCcgGUCgaGGCGGCGGAGgCGGu -3'
miRNA:   3'- aCUGCA-GuaCAG--UCGCCGCUUUgGCU- -5'
14607 3' -52.8 NC_003521.1 + 88061 0.71 0.922501
Target:  5'- aUGAgGUCGcggugGUCGGCGGCGcccguGACCa- -3'
miRNA:   3'- -ACUgCAGUa----CAGUCGCCGCu----UUGGcu -5'
14607 3' -52.8 NC_003521.1 + 74789 0.71 0.922501
Target:  5'- cGACGgcggCAgcggUAGCGGCGAGACgCGGa -3'
miRNA:   3'- aCUGCa---GUaca-GUCGCCGCUUUG-GCU- -5'
14607 3' -52.8 NC_003521.1 + 168475 0.71 0.927308
Target:  5'- gUGGCugGUCAgGUCgaucaugGGCGGCGAGACgGAg -3'
miRNA:   3'- -ACUG--CAGUaCAG-------UCGCCGCUUUGgCU- -5'
14607 3' -52.8 NC_003521.1 + 110689 0.71 0.92783
Target:  5'- gUGGCGgCAg--CGGCGGCGccGCCGAc -3'
miRNA:   3'- -ACUGCaGUacaGUCGCCGCuuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 122728 0.7 0.932926
Target:  5'- cGugGUCGUGggCGaCGGCGccGCCGAu -3'
miRNA:   3'- aCugCAGUACa-GUcGCCGCuuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 169450 0.7 0.932926
Target:  5'- cGGCGUCGg--CGGCGGCGGGuucgucGCCa- -3'
miRNA:   3'- aCUGCAGUacaGUCGCCGCUU------UGGcu -5'
14607 3' -52.8 NC_003521.1 + 15338 0.7 0.932926
Target:  5'- cGAUGUCGUGUUAucGUGugauuGUGAGACCGAu -3'
miRNA:   3'- aCUGCAGUACAGU--CGC-----CGCUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 163309 0.7 0.932926
Target:  5'- cGGCGUgucCAcgGUCAGCGGCGcGAgCGGc -3'
miRNA:   3'- aCUGCA---GUa-CAGUCGCCGCuUUgGCU- -5'
14607 3' -52.8 NC_003521.1 + 17134 0.7 0.937789
Target:  5'- gGACGUggacgaGUGguuccagCAGCGGCGcgAGGCCGAg -3'
miRNA:   3'- aCUGCAg-----UACa------GUCGCCGC--UUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 97624 0.7 0.937789
Target:  5'- cGuCGUCGUGcUCAggcucgacguucGCGGCGgcGCCGGg -3'
miRNA:   3'- aCuGCAGUAC-AGU------------CGCCGCuuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 123975 0.7 0.937789
Target:  5'- aGGuCGUCGcgGUCGGCGGCcgucaggucugGAAACCGc -3'
miRNA:   3'- aCU-GCAGUa-CAGUCGCCG-----------CUUUGGCu -5'
14607 3' -52.8 NC_003521.1 + 65503 0.7 0.942421
Target:  5'- aGGCGaccuUCAucgagcgcUGUCAGCugGGCGAcGCCGAg -3'
miRNA:   3'- aCUGC----AGU--------ACAGUCG--CCGCUuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 23827 0.7 0.942421
Target:  5'- cGACGUCucg-UGGCGG-GAGGCCGAc -3'
miRNA:   3'- aCUGCAGuacaGUCGCCgCUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 98920 0.7 0.946822
Target:  5'- gGGCGagUUGUGUCGGaucGCGGGACCGAg -3'
miRNA:   3'- aCUGC--AGUACAGUCgc-CGCUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 130128 0.7 0.946822
Target:  5'- -uGCGUC--GUCGGCGGCGccGCCGc -3'
miRNA:   3'- acUGCAGuaCAGUCGCCGCuuUGGCu -5'
14607 3' -52.8 NC_003521.1 + 23527 0.7 0.950996
Target:  5'- cGugGUCAccacccUGUCGGUGGUGGuGGCCa- -3'
miRNA:   3'- aCugCAGU------ACAGUCGCCGCU-UUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.