miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14607 3' -52.8 NC_003521.1 + 239769 0.67 0.988093
Target:  5'- cUGGCG-CAgGUCGGUGGCcccGAcGCCGGc -3'
miRNA:   3'- -ACUGCaGUaCAGUCGCCG---CUuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 236218 0.66 0.992589
Target:  5'- gUGAgGUCAUGUUcccccgcGCGGCccguuagcaaaccgGAGGCCGGc -3'
miRNA:   3'- -ACUgCAGUACAGu------CGCCG--------------CUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 233618 0.69 0.96827
Target:  5'- cGGCGggGUGcucgagggcaauuUCAGCGGCGgcGCCGu -3'
miRNA:   3'- aCUGCagUAC-------------AGUCGCCGCuuUGGCu -5'
14607 3' -52.8 NC_003521.1 + 228026 0.66 0.993799
Target:  5'- -cACGUCuucggcauUGUCGGUGGCGuuAAGCgGAg -3'
miRNA:   3'- acUGCAGu-------ACAGUCGCCGC--UUUGgCU- -5'
14607 3' -52.8 NC_003521.1 + 226164 0.66 0.993799
Target:  5'- cGGCGUCGU-UCAGCGcGCaGAAggGCCa- -3'
miRNA:   3'- aCUGCAGUAcAGUCGC-CG-CUU--UGGcu -5'
14607 3' -52.8 NC_003521.1 + 218839 1.1 0.008867
Target:  5'- uUGACGUCAUGUCAGCGGCGAAACCGAa -3'
miRNA:   3'- -ACUGCAGUACAGUCGCCGCUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 218191 0.66 0.994618
Target:  5'- aGACGUaCAUGgu-GCGGUGGGugucCCGGg -3'
miRNA:   3'- aCUGCA-GUACaguCGCCGCUUu---GGCU- -5'
14607 3' -52.8 NC_003521.1 + 217326 0.67 0.98491
Target:  5'- aGAuCGUCAgcaCGGUGGCGGAcggcgGCCGGu -3'
miRNA:   3'- aCU-GCAGUacaGUCGCCGCUU-----UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 212092 0.66 0.993799
Target:  5'- -cGCGUCugguUGUCGGCGuGCGccACCa- -3'
miRNA:   3'- acUGCAGu---ACAGUCGC-CGCuuUGGcu -5'
14607 3' -52.8 NC_003521.1 + 209729 0.68 0.971457
Target:  5'- gGAgGUCGUGcgCAGCGGCagccacGGcAGCCGGa -3'
miRNA:   3'- aCUgCAGUACa-GUCGCCG------CU-UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 209075 0.71 0.922501
Target:  5'- cGAUGUgCcgGUCgaGGCGGCGGAGgCGGu -3'
miRNA:   3'- aCUGCA-GuaCAG--UCGCCGCUUUgGCU- -5'
14607 3' -52.8 NC_003521.1 + 204769 0.68 0.971457
Target:  5'- --cUGUUGUGUCGGCGGCGGGcuuacGgCGAa -3'
miRNA:   3'- acuGCAGUACAGUCGCCGCUU-----UgGCU- -5'
14607 3' -52.8 NC_003521.1 + 203664 0.68 0.971177
Target:  5'- uUGugGUCGUccGUCAGCaGGUagaagcaGAAGCCGc -3'
miRNA:   3'- -ACugCAGUA--CAGUCG-CCG-------CUUUGGCu -5'
14607 3' -52.8 NC_003521.1 + 203313 0.68 0.976652
Target:  5'- gGACGUCGcugaUGUCcGCGGgccCGAAaacGCCGGg -3'
miRNA:   3'- aCUGCAGU----ACAGuCGCC---GCUU---UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 203022 0.68 0.978972
Target:  5'- aGACGg---GuUCGGCGGUGAuAGCCGGu -3'
miRNA:   3'- aCUGCaguaC-AGUCGCCGCU-UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 202054 0.69 0.968569
Target:  5'- cGACGUCuccUCAGCauGGCGGacgacaGACCGGg -3'
miRNA:   3'- aCUGCAGuacAGUCG--CCGCU------UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 198801 0.66 0.992884
Target:  5'- -uGCGUgGUGcCGGCGGCGucugucguGCCGc -3'
miRNA:   3'- acUGCAgUACaGUCGCCGCuu------UGGCu -5'
14607 3' -52.8 NC_003521.1 + 198384 0.75 0.771508
Target:  5'- cGGCGUUGUGgcgGGCGGCGAcuCCGGc -3'
miRNA:   3'- aCUGCAGUACag-UCGCCGCUuuGGCU- -5'
14607 3' -52.8 NC_003521.1 + 190542 0.71 0.911144
Target:  5'- cGGCGgCAg--CAGCGGCGGAcCCGGc -3'
miRNA:   3'- aCUGCaGUacaGUCGCCGCUUuGGCU- -5'
14607 3' -52.8 NC_003521.1 + 186910 0.67 0.989075
Target:  5'- cUGACGUCcaaggggggcgccgGUGgcgggggCGGCGGCGAacgcAACuCGAg -3'
miRNA:   3'- -ACUGCAG--------------UACa------GUCGCCGCU----UUG-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.