miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14608 3' -64 NC_003521.1 + 236863 0.67 0.644092
Target:  5'- uGCC-CCGGGUCCUCCGcuucUUCGGAu -3'
miRNA:   3'- gCGGaGGUCCGGGAGGCucu-GGGCCU- -5'
14608 3' -64 NC_003521.1 + 236390 0.68 0.551019
Target:  5'- uCGCCUCgGGcGUUCUCCGGGAgUCGcGAa -3'
miRNA:   3'- -GCGGAGgUC-CGGGAGGCUCUgGGC-CU- -5'
14608 3' -64 NC_003521.1 + 234971 0.69 0.521076
Target:  5'- uGCCcgcgCCcggaucgcauaaaaGGGCCCcggucgCCGGGACCCGGc -3'
miRNA:   3'- gCGGa---GG--------------UCCGGGa-----GGCUCUGGGCCu -5'
14608 3' -64 NC_003521.1 + 234452 0.73 0.31129
Target:  5'- gCGCCccUCCGcgaccccgaccGGcCCCUCUGGGAUCCGGAu -3'
miRNA:   3'- -GCGG--AGGU-----------CC-GGGAGGCUCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 233980 0.66 0.694383
Target:  5'- aCGCCUCCcacuacaaccuccucGGcGCCCUCCuGG-UCUGGAu -3'
miRNA:   3'- -GCGGAGG---------------UC-CGGGAGGcUCuGGGCCU- -5'
14608 3' -64 NC_003521.1 + 228062 0.67 0.625353
Target:  5'- gCGCacgCgCGGGUCCcagcucacgUCCGAGGCgCCGGAa -3'
miRNA:   3'- -GCGga-G-GUCCGGG---------AGGCUCUG-GGCCU- -5'
14608 3' -64 NC_003521.1 + 226917 0.71 0.413001
Target:  5'- gGCCUCCGcGGCCCccuccgcgCCGGGcccCCCGGc -3'
miRNA:   3'- gCGGAGGU-CCGGGa-------GGCUCu--GGGCCu -5'
14608 3' -64 NC_003521.1 + 223592 0.78 0.155756
Target:  5'- gCGCCUCCAccucGG-CCUCCGAGACCuCGGc -3'
miRNA:   3'- -GCGGAGGU----CCgGGAGGCUCUGG-GCCu -5'
14608 3' -64 NC_003521.1 + 220186 0.66 0.6628
Target:  5'- gCGCCcaCCAgcgcgcGGCUCUCCGAGcacAUCUGGAa -3'
miRNA:   3'- -GCGGa-GGU------CCGGGAGGCUC---UGGGCCU- -5'
14608 3' -64 NC_003521.1 + 219818 1.08 0.001272
Target:  5'- cCGCCUCCAGGCCCUCCGAGACCCGGAu -3'
miRNA:   3'- -GCGGAGGUCCGGGAGGCUCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 217723 0.68 0.587973
Target:  5'- uGCCgUCCcGGCCCcCCGcccGGCCaCGGAc -3'
miRNA:   3'- gCGG-AGGuCCGGGaGGCu--CUGG-GCCU- -5'
14608 3' -64 NC_003521.1 + 212950 0.72 0.374388
Target:  5'- cCGCCUCCaugcggucgAGGUCCUCCGugccguuacgAGACCgCGGc -3'
miRNA:   3'- -GCGGAGG---------UCCGGGAGGC----------UCUGG-GCCu -5'
14608 3' -64 NC_003521.1 + 210901 0.7 0.462434
Target:  5'- gGCCgucgCCAGGCCCU-UGAcGGCCaCGGGu -3'
miRNA:   3'- gCGGa---GGUCCGGGAgGCU-CUGG-GCCU- -5'
14608 3' -64 NC_003521.1 + 209926 0.7 0.479593
Target:  5'- uCGCCUgCCGcaguucagcucGGCCCUCUcGGACgCGGAa -3'
miRNA:   3'- -GCGGA-GGU-----------CCGGGAGGcUCUGgGCCU- -5'
14608 3' -64 NC_003521.1 + 204396 0.7 0.453976
Target:  5'- uCGUCUCCGcGGCCCUCCGA---CCGcGAa -3'
miRNA:   3'- -GCGGAGGU-CCGGGAGGCUcugGGC-CU- -5'
14608 3' -64 NC_003521.1 + 204354 0.67 0.606631
Target:  5'- uCGuCCUCC-GGUCCUUCGucgcGGCCCaGGAg -3'
miRNA:   3'- -GC-GGAGGuCCGGGAGGCu---CUGGG-CCU- -5'
14608 3' -64 NC_003521.1 + 204118 0.69 0.514804
Target:  5'- gCGCCUCCAccugcucgGGCCaggcgCCGGaGCCCGGc -3'
miRNA:   3'- -GCGGAGGU--------CCGGga---GGCUcUGGGCCu -5'
14608 3' -64 NC_003521.1 + 203411 0.75 0.245577
Target:  5'- aCGCCUcCCAGGCCgUCgCacaAGGCCCGGGc -3'
miRNA:   3'- -GCGGA-GGUCCGGgAG-Gc--UCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 202444 0.68 0.578681
Target:  5'- gGCCcuacgcCCAGGCCCUgCuAGugCUGGAc -3'
miRNA:   3'- gCGGa-----GGUCCGGGAgGcUCugGGCCU- -5'
14608 3' -64 NC_003521.1 + 196983 0.7 0.437316
Target:  5'- gCGCCUgugaCGGGCCCgcggCCGGcggcggcuGACCCGGc -3'
miRNA:   3'- -GCGGAg---GUCCGGGa---GGCU--------CUGGGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.