miRNA display CGI


Results 41 - 60 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14609 3' -59.6 NC_003521.1 + 162063 0.7 0.707265
Target:  5'- uGCGACGUcucGGACC-UCGUgGCCGUg-- -3'
miRNA:   3'- -CGCUGCG---CCUGGcAGCAgCGGCAgca -5'
14609 3' -59.6 NC_003521.1 + 74588 0.7 0.725678
Target:  5'- gGCGGCGCGGcgucccgcgGCCGgcgCGccUCGCCGcCGc -3'
miRNA:   3'- -CGCUGCGCC---------UGGCa--GC--AGCGGCaGCa -5'
14609 3' -59.6 NC_003521.1 + 179991 0.7 0.725678
Target:  5'- uGCucuCGCGGGCCGcCGUCGUggcauccuCGUCGa -3'
miRNA:   3'- -CGcu-GCGCCUGGCaGCAGCG--------GCAGCa -5'
14609 3' -59.6 NC_003521.1 + 164451 0.7 0.725678
Target:  5'- cGCGGcCGCGG-CCGUCacgGUCGCCGcUGc -3'
miRNA:   3'- -CGCU-GCGCCuGGCAG---CAGCGGCaGCa -5'
14609 3' -59.6 NC_003521.1 + 223397 0.69 0.734784
Target:  5'- cCGACGCGGGCCGUguggcgcccCGgcgCGgCGUCa- -3'
miRNA:   3'- cGCUGCGCCUGGCA---------GCa--GCgGCAGca -5'
14609 3' -59.6 NC_003521.1 + 82843 0.69 0.743814
Target:  5'- uCGcCGCGGGCggcggCGUCGcuaccagCGCCGUCGUc -3'
miRNA:   3'- cGCuGCGCCUG-----GCAGCa------GCGGCAGCA- -5'
14609 3' -59.6 NC_003521.1 + 116190 0.69 0.743814
Target:  5'- uGUGGcCGCGGAgaGgagggagaCGUCGCCGUCGc -3'
miRNA:   3'- -CGCU-GCGCCUggCa-------GCAGCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 102312 0.69 0.75276
Target:  5'- gGCGucCGCGGcAUCGUCGUCGUgCG-CGUg -3'
miRNA:   3'- -CGCu-GCGCC-UGGCAGCAGCG-GCaGCA- -5'
14609 3' -59.6 NC_003521.1 + 113797 0.69 0.75276
Target:  5'- cGCGACG-GGcACCG-CGgcggCGUCGUCGg -3'
miRNA:   3'- -CGCUGCgCC-UGGCaGCa---GCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 229558 0.69 0.761615
Target:  5'- aGCGugauaugccccaACGCGGGCuCGaCGuUCGCCGUCa- -3'
miRNA:   3'- -CGC------------UGCGCCUG-GCaGC-AGCGGCAGca -5'
14609 3' -59.6 NC_003521.1 + 123958 0.69 0.770371
Target:  5'- cGCGccacuGCGCGcGCagGUCGUCGCgGUCGg -3'
miRNA:   3'- -CGC-----UGCGCcUGg-CAGCAGCGgCAGCa -5'
14609 3' -59.6 NC_003521.1 + 204809 0.69 0.770371
Target:  5'- aCGGuCGUgGGGCCGccaccucCGUCGCCGUCGc -3'
miRNA:   3'- cGCU-GCG-CCUGGCa------GCAGCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 78206 0.69 0.770371
Target:  5'- aGCgGGCGCGGcGCuCGUCGgagGCUGUCGa -3'
miRNA:   3'- -CG-CUGCGCC-UG-GCAGCag-CGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 61885 0.68 0.78756
Target:  5'- aGCuGACGCuccaGGaaGCC-UCGUCGCCGUCa- -3'
miRNA:   3'- -CG-CUGCG----CC--UGGcAGCAGCGGCAGca -5'
14609 3' -59.6 NC_003521.1 + 212076 0.68 0.795978
Target:  5'- gGUGGCGCGGcCCGcgcgCGUCugGuuGUCGg -3'
miRNA:   3'- -CGCUGCGCCuGGCa---GCAG--CggCAGCa -5'
14609 3' -59.6 NC_003521.1 + 115360 0.68 0.795978
Target:  5'- gGCGGCGCGGGCgCGU--UCGCCacGUCc- -3'
miRNA:   3'- -CGCUGCGCCUG-GCAgcAGCGG--CAGca -5'
14609 3' -59.6 NC_003521.1 + 109579 0.68 0.795978
Target:  5'- aGCGcCGCuc-CCGUCGgcaUCGCCGUCGc -3'
miRNA:   3'- -CGCuGCGccuGGCAGC---AGCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 77047 0.68 0.804269
Target:  5'- gGUGGCGCcgcuACCGUUGUUGCCGcCGc -3'
miRNA:   3'- -CGCUGCGcc--UGGCAGCAGCGGCaGCa -5'
14609 3' -59.6 NC_003521.1 + 151496 0.68 0.804269
Target:  5'- uGCGAcauCGCGGACgGUgaacuacCGCCGUCGg -3'
miRNA:   3'- -CGCU---GCGCCUGgCAgca----GCGGCAGCa -5'
14609 3' -59.6 NC_003521.1 + 180113 0.68 0.812427
Target:  5'- aGCGuC-UGGgaGCCGUCGUCGUCGUCc- -3'
miRNA:   3'- -CGCuGcGCC--UGGCAGCAGCGGCAGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.