Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14609 | 5' | -46.5 | NC_003521.1 | + | 10055 | 0.66 | 0.999998 |
Target: 5'- -gAUUACaGCA-GGAAUUCUGUGUCu -3' miRNA: 3'- aaUGAUGcUGUgCUUUAAGACGCAGc -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 16500 | 0.66 | 0.999998 |
Target: 5'- -cGCUACGAgCACGGg---CUGCGgcgcUCGg -3' miRNA: 3'- aaUGAUGCU-GUGCUuuaaGACGC----AGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 5424 | 0.66 | 0.999998 |
Target: 5'- ----gACGAgGCGGAGgaaUCgGCGUCGg -3' miRNA: 3'- aaugaUGCUgUGCUUUa--AGaCGCAGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 183085 | 0.66 | 0.999998 |
Target: 5'- gUACUggGCGACgGCGAucucUUCUGCGacUCGu -3' miRNA: 3'- aAUGA--UGCUG-UGCUuu--AAGACGC--AGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 8911 | 0.66 | 0.999998 |
Target: 5'- -gGCUACGGCGCGGGAgaagagccgCUGCc--- -3' miRNA: 3'- aaUGAUGCUGUGCUUUaa-------GACGcagc -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 42486 | 0.66 | 0.999997 |
Target: 5'- gUACggUACGAUAucCGAcGUUCaGCGUCGa -3' miRNA: 3'- aAUG--AUGCUGU--GCUuUAAGaCGCAGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 162043 | 0.66 | 0.999997 |
Target: 5'- --cCUGCGACAuCGAGGUcgaCUGCGaCGu -3' miRNA: 3'- aauGAUGCUGU-GCUUUAa--GACGCaGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 205918 | 0.66 | 0.999997 |
Target: 5'- cUGCUGCGcuuCGAGGgcgcCUGCGUCu -3' miRNA: 3'- aAUGAUGCuguGCUUUaa--GACGCAGc -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 81978 | 0.66 | 0.999995 |
Target: 5'- -cGCUA-GAgACGAuaccCUGCGUCGg -3' miRNA: 3'- aaUGAUgCUgUGCUuuaaGACGCAGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 46700 | 0.66 | 0.999995 |
Target: 5'- gUACUGCcGCACGAugaacuccCUGCGuUCGa -3' miRNA: 3'- aAUGAUGcUGUGCUuuaa----GACGC-AGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 73999 | 0.66 | 0.999995 |
Target: 5'- gUACUACGACAaccuGGUaCUGCG-CGa -3' miRNA: 3'- aAUGAUGCUGUgcu-UUAaGACGCaGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 218720 | 0.66 | 0.999995 |
Target: 5'- -gGCgGCGGCggGCGAGAagCgGCGUCGg -3' miRNA: 3'- aaUGaUGCUG--UGCUUUaaGaCGCAGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 17522 | 0.66 | 0.999995 |
Target: 5'- -gGCccgGCGGCGCGGGAUUCagccaguUGCG-CGa -3' miRNA: 3'- aaUGa--UGCUGUGCUUUAAG-------ACGCaGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 141109 | 0.67 | 0.999991 |
Target: 5'- cUACUGCGGCccGCGcAGcUUCUGCGcccgCGa -3' miRNA: 3'- aAUGAUGCUG--UGC-UUuAAGACGCa---GC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 204116 | 0.67 | 0.999991 |
Target: 5'- -gGCgUGCGGCACGAAGggcaccaucaccagCUGCGUg- -3' miRNA: 3'- aaUG-AUGCUGUGCUUUaa------------GACGCAgc -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 197828 | 0.67 | 0.999987 |
Target: 5'- -cGC-GCGACACGGccgUCUGCagGUCGu -3' miRNA: 3'- aaUGaUGCUGUGCUuuaAGACG--CAGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 158570 | 0.67 | 0.999987 |
Target: 5'- --cCUGCGAgGCGAAAcUCUGagaaGUCu -3' miRNA: 3'- aauGAUGCUgUGCUUUaAGACg---CAGc -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 213044 | 0.67 | 0.999987 |
Target: 5'- gUGCUccccauuuCGACGCGAGGagCUGCGcCGu -3' miRNA: 3'- aAUGAu-------GCUGUGCUUUaaGACGCaGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 27250 | 0.67 | 0.999987 |
Target: 5'- cUGCUACGugGCG-----CUGCuGUCGg -3' miRNA: 3'- aAUGAUGCugUGCuuuaaGACG-CAGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 168071 | 0.67 | 0.999982 |
Target: 5'- gUGCUcgaGACGCGggGggCUGCagagGUCGg -3' miRNA: 3'- aAUGAug-CUGUGCuuUaaGACG----CAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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