miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14609 5' -46.5 NC_003521.1 + 220687 1.07 0.050378
Target:  5'- gUUACUACGACACGAAAUUCUGCGUCGc -3'
miRNA:   3'- -AAUGAUGCUGUGCUUUAAGACGCAGC- -5'
14609 5' -46.5 NC_003521.1 + 42486 0.66 0.999997
Target:  5'- gUACggUACGAUAucCGAcGUUCaGCGUCGa -3'
miRNA:   3'- aAUG--AUGCUGU--GCUuUAAGaCGCAGC- -5'
14609 5' -46.5 NC_003521.1 + 218720 0.66 0.999995
Target:  5'- -gGCgGCGGCggGCGAGAagCgGCGUCGg -3'
miRNA:   3'- aaUGaUGCUG--UGCUUUaaGaCGCAGC- -5'
14609 5' -46.5 NC_003521.1 + 73999 0.66 0.999995
Target:  5'- gUACUACGACAaccuGGUaCUGCG-CGa -3'
miRNA:   3'- aAUGAUGCUGUgcu-UUAaGACGCaGC- -5'
14609 5' -46.5 NC_003521.1 + 46700 0.66 0.999995
Target:  5'- gUACUGCcGCACGAugaacuccCUGCGuUCGa -3'
miRNA:   3'- aAUGAUGcUGUGCUuuaa----GACGC-AGC- -5'
14609 5' -46.5 NC_003521.1 + 17522 0.66 0.999995
Target:  5'- -gGCccgGCGGCGCGGGAUUCagccaguUGCG-CGa -3'
miRNA:   3'- aaUGa--UGCUGUGCUUUAAG-------ACGCaGC- -5'
14609 5' -46.5 NC_003521.1 + 141109 0.67 0.999991
Target:  5'- cUACUGCGGCccGCGcAGcUUCUGCGcccgCGa -3'
miRNA:   3'- aAUGAUGCUG--UGC-UUuAAGACGCa---GC- -5'
14609 5' -46.5 NC_003521.1 + 158570 0.67 0.999987
Target:  5'- --cCUGCGAgGCGAAAcUCUGagaaGUCu -3'
miRNA:   3'- aauGAUGCUgUGCUUUaAGACg---CAGc -5'
14609 5' -46.5 NC_003521.1 + 149235 0.67 0.999978
Target:  5'- -aGCUGCGGCGCGGcuacuacgccuAcgacguggccaugucGUUCcGCGUCGg -3'
miRNA:   3'- aaUGAUGCUGUGCU-----------U---------------UAAGaCGCAGC- -5'
14609 5' -46.5 NC_003521.1 + 31298 0.71 0.998171
Target:  5'- ----gGCGuuGCACGggGUUCUGCG-CGa -3'
miRNA:   3'- aaugaUGC--UGUGCuuUAAGACGCaGC- -5'
14609 5' -46.5 NC_003521.1 + 101152 0.7 0.999446
Target:  5'- -aGC-GCGGCGCGG---UCUGCGUCc -3'
miRNA:   3'- aaUGaUGCUGUGCUuuaAGACGCAGc -5'
14609 5' -46.5 NC_003521.1 + 131364 0.69 0.99981
Target:  5'- -aGCUcaucgGCGGCAUGGAGUUCgccgaggugacggGCGUCa -3'
miRNA:   3'- aaUGA-----UGCUGUGCUUUAAGa------------CGCAGc -5'
14609 5' -46.5 NC_003521.1 + 163711 0.68 0.999941
Target:  5'- -gGCcACGAgGCcGAAUcCUGCGUCGg -3'
miRNA:   3'- aaUGaUGCUgUGcUUUAaGACGCAGC- -5'
14609 5' -46.5 NC_003521.1 + 194534 0.68 0.999955
Target:  5'- -cGCUGCGAU-CGAAcugUCUgccGCGUCGg -3'
miRNA:   3'- aaUGAUGCUGuGCUUua-AGA---CGCAGC- -5'
14609 5' -46.5 NC_003521.1 + 210956 0.68 0.999955
Target:  5'- -aACaGCGcCACGGccUUCUGCGUCc -3'
miRNA:   3'- aaUGaUGCuGUGCUuuAAGACGCAGc -5'
14609 5' -46.5 NC_003521.1 + 16500 0.66 0.999998
Target:  5'- -cGCUACGAgCACGGg---CUGCGgcgcUCGg -3'
miRNA:   3'- aaUGAUGCU-GUGCUuuaaGACGC----AGC- -5'
14609 5' -46.5 NC_003521.1 + 115225 0.76 0.957046
Target:  5'- -cGCgGCGACACGGAcacgcaGUacaUCUGCGUCGa -3'
miRNA:   3'- aaUGaUGCUGUGCUU------UA---AGACGCAGC- -5'
14609 5' -46.5 NC_003521.1 + 185467 0.72 0.995302
Target:  5'- cUACUACGACuccuccaugaccccCGAcGUUCUGCuGUCGa -3'
miRNA:   3'- aAUGAUGCUGu-------------GCUuUAAGACG-CAGC- -5'
14609 5' -46.5 NC_003521.1 + 52600 0.72 0.99653
Target:  5'- cUGCUGCGACcgcuucgACGAguggcaggaccggguGAUcCUGCGUCGg -3'
miRNA:   3'- aAUGAUGCUG-------UGCU---------------UUAaGACGCAGC- -5'
14609 5' -46.5 NC_003521.1 + 13852 0.71 0.99848
Target:  5'- -gGCU-CGGCGCGggGgucUCUGCGggCGg -3'
miRNA:   3'- aaUGAuGCUGUGCuuUa--AGACGCa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.