miRNA display CGI


Results 21 - 40 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14609 5' -46.5 NC_003521.1 + 162043 0.66 0.999997
Target:  5'- --cCUGCGACAuCGAGGUcgaCUGCGaCGu -3'
miRNA:   3'- aauGAUGCUGU-GCUUUAa--GACGCaGC- -5'
14609 5' -46.5 NC_003521.1 + 205918 0.66 0.999997
Target:  5'- cUGCUGCGcuuCGAGGgcgcCUGCGUCu -3'
miRNA:   3'- aAUGAUGCuguGCUUUaa--GACGCAGc -5'
14609 5' -46.5 NC_003521.1 + 5424 0.66 0.999998
Target:  5'- ----gACGAgGCGGAGgaaUCgGCGUCGg -3'
miRNA:   3'- aaugaUGCUgUGCUUUa--AGaCGCAGC- -5'
14609 5' -46.5 NC_003521.1 + 183085 0.66 0.999998
Target:  5'- gUACUggGCGACgGCGAucucUUCUGCGacUCGu -3'
miRNA:   3'- aAUGA--UGCUG-UGCUuu--AAGACGC--AGC- -5'
14609 5' -46.5 NC_003521.1 + 8911 0.66 0.999998
Target:  5'- -gGCUACGGCGCGGGAgaagagccgCUGCc--- -3'
miRNA:   3'- aaUGAUGCUGUGCUUUaa-------GACGcagc -5'
14609 5' -46.5 NC_003521.1 + 10055 0.66 0.999998
Target:  5'- -gAUUACaGCA-GGAAUUCUGUGUCu -3'
miRNA:   3'- aaUGAUGcUGUgCUUUAAGACGCAGc -5'
14609 5' -46.5 NC_003521.1 + 16500 0.66 0.999998
Target:  5'- -cGCUACGAgCACGGg---CUGCGgcgcUCGg -3'
miRNA:   3'- aaUGAUGCU-GUGCUuuaaGACGC----AGC- -5'
14609 5' -46.5 NC_003521.1 + 168071 0.67 0.999982
Target:  5'- gUGCUcgaGACGCGggGggCUGCagagGUCGg -3'
miRNA:   3'- aAUGAug-CUGUGCuuUaaGACG----CAGC- -5'
14609 5' -46.5 NC_003521.1 + 228579 0.67 0.999967
Target:  5'- -aGCU-CGGCAgCGAGAgugaggUCUGcCGUCGa -3'
miRNA:   3'- aaUGAuGCUGU-GCUUUa-----AGAC-GCAGC- -5'
14609 5' -46.5 NC_003521.1 + 115225 0.76 0.957046
Target:  5'- -cGCgGCGACACGGAcacgcaGUacaUCUGCGUCGa -3'
miRNA:   3'- aaUGaUGCUGUGCUU------UA---AGACGCAGC- -5'
14609 5' -46.5 NC_003521.1 + 185467 0.72 0.995302
Target:  5'- cUACUACGACuccuccaugaccccCGAcGUUCUGCuGUCGa -3'
miRNA:   3'- aAUGAUGCUGu-------------GCUuUAAGACG-CAGC- -5'
14609 5' -46.5 NC_003521.1 + 52600 0.72 0.99653
Target:  5'- cUGCUGCGACcgcuucgACGAguggcaggaccggguGAUcCUGCGUCGg -3'
miRNA:   3'- aAUGAUGCUG-------UGCU---------------UUAaGACGCAGC- -5'
14609 5' -46.5 NC_003521.1 + 13852 0.71 0.99848
Target:  5'- -gGCU-CGGCGCGggGgucUCUGCGggCGg -3'
miRNA:   3'- aaUGAuGCUGUGCuuUa--AGACGCa-GC- -5'
14609 5' -46.5 NC_003521.1 + 205885 0.71 0.998743
Target:  5'- gUGCgccGCGACuACGAGggUCUGCGcCGc -3'
miRNA:   3'- aAUGa--UGCUG-UGCUUuaAGACGCaGC- -5'
14609 5' -46.5 NC_003521.1 + 142365 0.69 0.999779
Target:  5'- -cACUACGACuACcuccuccUCUGCGUCGu -3'
miRNA:   3'- aaUGAUGCUG-UGcuuua--AGACGCAGC- -5'
14609 5' -46.5 NC_003521.1 + 193697 0.69 0.999863
Target:  5'- aUUGCUACGAugaccucCACGA----CUGCGUCu -3'
miRNA:   3'- -AAUGAUGCU-------GUGCUuuaaGACGCAGc -5'
14609 5' -46.5 NC_003521.1 + 111083 0.68 0.999897
Target:  5'- -gGCgaagACGGCGCGGAcgcgcUCgGCGUCGa -3'
miRNA:   3'- aaUGa---UGCUGUGCUUua---AGaCGCAGC- -5'
14609 5' -46.5 NC_003521.1 + 14600 0.68 0.999941
Target:  5'- -gGCUACGGCACGGuGAUUaUGCGg-- -3'
miRNA:   3'- aaUGAUGCUGUGCU-UUAAgACGCagc -5'
14609 5' -46.5 NC_003521.1 + 137453 0.68 0.999955
Target:  5'- -gGCUGCccGACACGG---UCUGCGUg- -3'
miRNA:   3'- aaUGAUG--CUGUGCUuuaAGACGCAgc -5'
14609 5' -46.5 NC_003521.1 + 65712 0.67 0.999966
Target:  5'- -aACUugGugaguagGCAUGAuGUUCUGUGUCu -3'
miRNA:   3'- aaUGAugC-------UGUGCUuUAAGACGCAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.