miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14609 5' -46.5 NC_003521.1 + 141109 0.67 0.999991
Target:  5'- cUACUGCGGCccGCGcAGcUUCUGCGcccgCGa -3'
miRNA:   3'- aAUGAUGCUG--UGC-UUuAAGACGCa---GC- -5'
14609 5' -46.5 NC_003521.1 + 142365 0.69 0.999779
Target:  5'- -cACUACGACuACcuccuccUCUGCGUCGu -3'
miRNA:   3'- aaUGAUGCUG-UGcuuua--AGACGCAGC- -5'
14609 5' -46.5 NC_003521.1 + 149235 0.67 0.999978
Target:  5'- -aGCUGCGGCGCGGcuacuacgccuAcgacguggccaugucGUUCcGCGUCGg -3'
miRNA:   3'- aaUGAUGCUGUGCU-----------U---------------UAAGaCGCAGC- -5'
14609 5' -46.5 NC_003521.1 + 158570 0.67 0.999987
Target:  5'- --cCUGCGAgGCGAAAcUCUGagaaGUCu -3'
miRNA:   3'- aauGAUGCUgUGCUUUaAGACg---CAGc -5'
14609 5' -46.5 NC_003521.1 + 162043 0.66 0.999997
Target:  5'- --cCUGCGACAuCGAGGUcgaCUGCGaCGu -3'
miRNA:   3'- aauGAUGCUGU-GCUUUAa--GACGCaGC- -5'
14609 5' -46.5 NC_003521.1 + 163711 0.68 0.999941
Target:  5'- -gGCcACGAgGCcGAAUcCUGCGUCGg -3'
miRNA:   3'- aaUGaUGCUgUGcUUUAaGACGCAGC- -5'
14609 5' -46.5 NC_003521.1 + 168071 0.67 0.999982
Target:  5'- gUGCUcgaGACGCGggGggCUGCagagGUCGg -3'
miRNA:   3'- aAUGAug-CUGUGCuuUaaGACG----CAGC- -5'
14609 5' -46.5 NC_003521.1 + 183085 0.66 0.999998
Target:  5'- gUACUggGCGACgGCGAucucUUCUGCGacUCGu -3'
miRNA:   3'- aAUGA--UGCUG-UGCUuu--AAGACGC--AGC- -5'
14609 5' -46.5 NC_003521.1 + 185467 0.72 0.995302
Target:  5'- cUACUACGACuccuccaugaccccCGAcGUUCUGCuGUCGa -3'
miRNA:   3'- aAUGAUGCUGu-------------GCUuUAAGACG-CAGC- -5'
14609 5' -46.5 NC_003521.1 + 193697 0.69 0.999863
Target:  5'- aUUGCUACGAugaccucCACGA----CUGCGUCu -3'
miRNA:   3'- -AAUGAUGCU-------GUGCUuuaaGACGCAGc -5'
14609 5' -46.5 NC_003521.1 + 194534 0.68 0.999955
Target:  5'- -cGCUGCGAU-CGAAcugUCUgccGCGUCGg -3'
miRNA:   3'- aaUGAUGCUGuGCUUua-AGA---CGCAGC- -5'
14609 5' -46.5 NC_003521.1 + 197828 0.67 0.999987
Target:  5'- -cGC-GCGACACGGccgUCUGCagGUCGu -3'
miRNA:   3'- aaUGaUGCUGUGCUuuaAGACG--CAGC- -5'
14609 5' -46.5 NC_003521.1 + 204116 0.67 0.999991
Target:  5'- -gGCgUGCGGCACGAAGggcaccaucaccagCUGCGUg- -3'
miRNA:   3'- aaUG-AUGCUGUGCUUUaa------------GACGCAgc -5'
14609 5' -46.5 NC_003521.1 + 205885 0.71 0.998743
Target:  5'- gUGCgccGCGACuACGAGggUCUGCGcCGc -3'
miRNA:   3'- aAUGa--UGCUG-UGCUUuaAGACGCaGC- -5'
14609 5' -46.5 NC_003521.1 + 205918 0.66 0.999997
Target:  5'- cUGCUGCGcuuCGAGGgcgcCUGCGUCu -3'
miRNA:   3'- aAUGAUGCuguGCUUUaa--GACGCAGc -5'
14609 5' -46.5 NC_003521.1 + 210956 0.68 0.999955
Target:  5'- -aACaGCGcCACGGccUUCUGCGUCc -3'
miRNA:   3'- aaUGaUGCuGUGCUuuAAGACGCAGc -5'
14609 5' -46.5 NC_003521.1 + 213044 0.67 0.999987
Target:  5'- gUGCUccccauuuCGACGCGAGGagCUGCGcCGu -3'
miRNA:   3'- aAUGAu-------GCUGUGCUUUaaGACGCaGC- -5'
14609 5' -46.5 NC_003521.1 + 218720 0.66 0.999995
Target:  5'- -gGCgGCGGCggGCGAGAagCgGCGUCGg -3'
miRNA:   3'- aaUGaUGCUG--UGCUUUaaGaCGCAGC- -5'
14609 5' -46.5 NC_003521.1 + 219282 0.85 0.638774
Target:  5'- gUAgUACGACAUGAAGUUCUGCucGUCGa -3'
miRNA:   3'- aAUgAUGCUGUGCUUUAAGACG--CAGC- -5'
14609 5' -46.5 NC_003521.1 + 220687 1.07 0.050378
Target:  5'- gUUACUACGACACGAAAUUCUGCGUCGc -3'
miRNA:   3'- -AAUGAUGCUGUGCUUUAAGACGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.