Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14609 | 5' | -46.5 | NC_003521.1 | + | 5424 | 0.66 | 0.999998 |
Target: 5'- ----gACGAgGCGGAGgaaUCgGCGUCGg -3' miRNA: 3'- aaugaUGCUgUGCUUUa--AGaCGCAGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 8911 | 0.66 | 0.999998 |
Target: 5'- -gGCUACGGCGCGGGAgaagagccgCUGCc--- -3' miRNA: 3'- aaUGAUGCUGUGCUUUaa-------GACGcagc -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 10055 | 0.66 | 0.999998 |
Target: 5'- -gAUUACaGCA-GGAAUUCUGUGUCu -3' miRNA: 3'- aaUGAUGcUGUgCUUUAAGACGCAGc -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 13852 | 0.71 | 0.99848 |
Target: 5'- -gGCU-CGGCGCGggGgucUCUGCGggCGg -3' miRNA: 3'- aaUGAuGCUGUGCuuUa--AGACGCa-GC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 14600 | 0.68 | 0.999941 |
Target: 5'- -gGCUACGGCACGGuGAUUaUGCGg-- -3' miRNA: 3'- aaUGAUGCUGUGCU-UUAAgACGCagc -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 16500 | 0.66 | 0.999998 |
Target: 5'- -cGCUACGAgCACGGg---CUGCGgcgcUCGg -3' miRNA: 3'- aaUGAUGCU-GUGCUuuaaGACGC----AGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 17522 | 0.66 | 0.999995 |
Target: 5'- -gGCccgGCGGCGCGGGAUUCagccaguUGCG-CGa -3' miRNA: 3'- aaUGa--UGCUGUGCUUUAAG-------ACGCaGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 27250 | 0.67 | 0.999987 |
Target: 5'- cUGCUACGugGCG-----CUGCuGUCGg -3' miRNA: 3'- aAUGAUGCugUGCuuuaaGACG-CAGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 31298 | 0.71 | 0.998171 |
Target: 5'- ----gGCGuuGCACGggGUUCUGCG-CGa -3' miRNA: 3'- aaugaUGC--UGUGCuuUAAGACGCaGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 42486 | 0.66 | 0.999997 |
Target: 5'- gUACggUACGAUAucCGAcGUUCaGCGUCGa -3' miRNA: 3'- aAUG--AUGCUGU--GCUuUAAGaCGCAGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 46700 | 0.66 | 0.999995 |
Target: 5'- gUACUGCcGCACGAugaacuccCUGCGuUCGa -3' miRNA: 3'- aAUGAUGcUGUGCUuuaa----GACGC-AGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 52600 | 0.72 | 0.99653 |
Target: 5'- cUGCUGCGACcgcuucgACGAguggcaggaccggguGAUcCUGCGUCGg -3' miRNA: 3'- aAUGAUGCUG-------UGCU---------------UUAaGACGCAGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 65712 | 0.67 | 0.999966 |
Target: 5'- -aACUugGugaguagGCAUGAuGUUCUGUGUCu -3' miRNA: 3'- aaUGAugC-------UGUGCUuUAAGACGCAGc -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 73999 | 0.66 | 0.999995 |
Target: 5'- gUACUACGACAaccuGGUaCUGCG-CGa -3' miRNA: 3'- aAUGAUGCUGUgcu-UUAaGACGCaGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 81978 | 0.66 | 0.999995 |
Target: 5'- -cGCUA-GAgACGAuaccCUGCGUCGg -3' miRNA: 3'- aaUGAUgCUgUGCUuuaaGACGCAGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 101152 | 0.7 | 0.999446 |
Target: 5'- -aGC-GCGGCGCGG---UCUGCGUCc -3' miRNA: 3'- aaUGaUGCUGUGCUuuaAGACGCAGc -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 111083 | 0.68 | 0.999897 |
Target: 5'- -gGCgaagACGGCGCGGAcgcgcUCgGCGUCGa -3' miRNA: 3'- aaUGa---UGCUGUGCUUua---AGaCGCAGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 115225 | 0.76 | 0.957046 |
Target: 5'- -cGCgGCGACACGGAcacgcaGUacaUCUGCGUCGa -3' miRNA: 3'- aaUGaUGCUGUGCUU------UA---AGACGCAGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 131364 | 0.69 | 0.99981 |
Target: 5'- -aGCUcaucgGCGGCAUGGAGUUCgccgaggugacggGCGUCa -3' miRNA: 3'- aaUGA-----UGCUGUGCUUUAAGa------------CGCAGc -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 137453 | 0.68 | 0.999955 |
Target: 5'- -gGCUGCccGACACGG---UCUGCGUg- -3' miRNA: 3'- aaUGAUG--CUGUGCUuuaAGACGCAgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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