Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14609 | 5' | -46.5 | NC_003521.1 | + | 228579 | 0.67 | 0.999967 |
Target: 5'- -aGCU-CGGCAgCGAGAgugaggUCUGcCGUCGa -3' miRNA: 3'- aaUGAuGCUGU-GCUUUa-----AGAC-GCAGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 220687 | 1.07 | 0.050378 |
Target: 5'- gUUACUACGACACGAAAUUCUGCGUCGc -3' miRNA: 3'- -AAUGAUGCUGUGCUUUAAGACGCAGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 219282 | 0.85 | 0.638774 |
Target: 5'- gUAgUACGACAUGAAGUUCUGCucGUCGa -3' miRNA: 3'- aAUgAUGCUGUGCUUUAAGACG--CAGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 218720 | 0.66 | 0.999995 |
Target: 5'- -gGCgGCGGCggGCGAGAagCgGCGUCGg -3' miRNA: 3'- aaUGaUGCUG--UGCUUUaaGaCGCAGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 213044 | 0.67 | 0.999987 |
Target: 5'- gUGCUccccauuuCGACGCGAGGagCUGCGcCGu -3' miRNA: 3'- aAUGAu-------GCUGUGCUUUaaGACGCaGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 210956 | 0.68 | 0.999955 |
Target: 5'- -aACaGCGcCACGGccUUCUGCGUCc -3' miRNA: 3'- aaUGaUGCuGUGCUuuAAGACGCAGc -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 205918 | 0.66 | 0.999997 |
Target: 5'- cUGCUGCGcuuCGAGGgcgcCUGCGUCu -3' miRNA: 3'- aAUGAUGCuguGCUUUaa--GACGCAGc -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 205885 | 0.71 | 0.998743 |
Target: 5'- gUGCgccGCGACuACGAGggUCUGCGcCGc -3' miRNA: 3'- aAUGa--UGCUG-UGCUUuaAGACGCaGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 204116 | 0.67 | 0.999991 |
Target: 5'- -gGCgUGCGGCACGAAGggcaccaucaccagCUGCGUg- -3' miRNA: 3'- aaUG-AUGCUGUGCUUUaa------------GACGCAgc -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 197828 | 0.67 | 0.999987 |
Target: 5'- -cGC-GCGACACGGccgUCUGCagGUCGu -3' miRNA: 3'- aaUGaUGCUGUGCUuuaAGACG--CAGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 194534 | 0.68 | 0.999955 |
Target: 5'- -cGCUGCGAU-CGAAcugUCUgccGCGUCGg -3' miRNA: 3'- aaUGAUGCUGuGCUUua-AGA---CGCAGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 193697 | 0.69 | 0.999863 |
Target: 5'- aUUGCUACGAugaccucCACGA----CUGCGUCu -3' miRNA: 3'- -AAUGAUGCU-------GUGCUuuaaGACGCAGc -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 185467 | 0.72 | 0.995302 |
Target: 5'- cUACUACGACuccuccaugaccccCGAcGUUCUGCuGUCGa -3' miRNA: 3'- aAUGAUGCUGu-------------GCUuUAAGACG-CAGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 183085 | 0.66 | 0.999998 |
Target: 5'- gUACUggGCGACgGCGAucucUUCUGCGacUCGu -3' miRNA: 3'- aAUGA--UGCUG-UGCUuu--AAGACGC--AGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 168071 | 0.67 | 0.999982 |
Target: 5'- gUGCUcgaGACGCGggGggCUGCagagGUCGg -3' miRNA: 3'- aAUGAug-CUGUGCuuUaaGACG----CAGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 163711 | 0.68 | 0.999941 |
Target: 5'- -gGCcACGAgGCcGAAUcCUGCGUCGg -3' miRNA: 3'- aaUGaUGCUgUGcUUUAaGACGCAGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 162043 | 0.66 | 0.999997 |
Target: 5'- --cCUGCGACAuCGAGGUcgaCUGCGaCGu -3' miRNA: 3'- aauGAUGCUGU-GCUUUAa--GACGCaGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 158570 | 0.67 | 0.999987 |
Target: 5'- --cCUGCGAgGCGAAAcUCUGagaaGUCu -3' miRNA: 3'- aauGAUGCUgUGCUUUaAGACg---CAGc -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 149235 | 0.67 | 0.999978 |
Target: 5'- -aGCUGCGGCGCGGcuacuacgccuAcgacguggccaugucGUUCcGCGUCGg -3' miRNA: 3'- aaUGAUGCUGUGCU-----------U---------------UAAGaCGCAGC- -5' |
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14609 | 5' | -46.5 | NC_003521.1 | + | 142365 | 0.69 | 0.999779 |
Target: 5'- -cACUACGACuACcuccuccUCUGCGUCGu -3' miRNA: 3'- aaUGAUGCUG-UGcuuua--AGACGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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