miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14610 5' -54.3 NC_003521.1 + 32990 0.66 0.983226
Target:  5'- -aGCCCUGGcgGaugaagccccgcaGGCUCUCGgccaGCUUg -3'
miRNA:   3'- cgCGGGACCuaCa------------UCGAGAGCa---UGAG- -5'
14610 5' -54.3 NC_003521.1 + 35838 0.66 0.982069
Target:  5'- cGCGCCgaGGAUGUagAGUUCaUCGcggGCg- -3'
miRNA:   3'- -CGCGGgaCCUACA--UCGAG-AGCa--UGag -5'
14610 5' -54.3 NC_003521.1 + 129249 0.66 0.982069
Target:  5'- cGCGCggcaCCUGGAUGUGGaagagcaUCUugccCGUGgUCa -3'
miRNA:   3'- -CGCG----GGACCUACAUCg------AGA----GCAUgAG- -5'
14610 5' -54.3 NC_003521.1 + 45234 0.66 0.980222
Target:  5'- uGCGCaaCCUGGAgcUGUAGCgucgguuaaccgcugCUgGUACUg -3'
miRNA:   3'- -CGCG--GGACCU--ACAUCGa--------------GAgCAUGAg -5'
14610 5' -54.3 NC_003521.1 + 227624 0.66 0.980009
Target:  5'- uCGUCCUGGGUGaAGUUggCGUGCa- -3'
miRNA:   3'- cGCGGGACCUACaUCGAgaGCAUGag -5'
14610 5' -54.3 NC_003521.1 + 63491 0.66 0.977778
Target:  5'- aGCGUCCUGGAccgGgcGCUgaUCGacaaaaUGCUCa -3'
miRNA:   3'- -CGCGGGACCUa--CauCGAg-AGC------AUGAG- -5'
14610 5' -54.3 NC_003521.1 + 47398 0.66 0.977778
Target:  5'- gGCGCUgcgcgagcggagCUGGAUGUAGCaucgCUCGgGC-Ca -3'
miRNA:   3'- -CGCGG------------GACCUACAUCGa---GAGCaUGaG- -5'
14610 5' -54.3 NC_003521.1 + 213117 0.66 0.975368
Target:  5'- aCGCgCUGGGUGUGGCg-UgGUGCg- -3'
miRNA:   3'- cGCGgGACCUACAUCGagAgCAUGag -5'
14610 5' -54.3 NC_003521.1 + 38716 0.66 0.975368
Target:  5'- gGCGUCCUGG-UGgcGCUacuuaagcgCGUGCUg -3'
miRNA:   3'- -CGCGGGACCuACauCGAga-------GCAUGAg -5'
14610 5' -54.3 NC_003521.1 + 44642 0.67 0.968219
Target:  5'- uGCGCCUgUGGGUGUuggagaagugcaaccGGCUCUgcgacgaccUGUACUUc -3'
miRNA:   3'- -CGCGGG-ACCUACA---------------UCGAGA---------GCAUGAG- -5'
14610 5' -54.3 NC_003521.1 + 82302 0.67 0.967001
Target:  5'- uGUGCgCCUGGAUGUuGCgCUUGUAg-- -3'
miRNA:   3'- -CGCG-GGACCUACAuCGaGAGCAUgag -5'
14610 5' -54.3 NC_003521.1 + 99919 0.67 0.965112
Target:  5'- -aGCCCgUGGAgguagugguacuucaUGUAGCUCagCGU-CUCg -3'
miRNA:   3'- cgCGGG-ACCU---------------ACAUCGAGa-GCAuGAG- -5'
14610 5' -54.3 NC_003521.1 + 172560 0.67 0.963812
Target:  5'- aUGCUggGGAUGUugaagggcaGGUUCUUGUACUCc -3'
miRNA:   3'- cGCGGgaCCUACA---------UCGAGAGCAUGAG- -5'
14610 5' -54.3 NC_003521.1 + 74337 0.67 0.963812
Target:  5'- gGCGCCCcgcUGGAUGgcGCUgCUgCGcgGCUa -3'
miRNA:   3'- -CGCGGG---ACCUACauCGA-GA-GCa-UGAg -5'
14610 5' -54.3 NC_003521.1 + 169942 0.68 0.948916
Target:  5'- -gGCCCUGG-UGUGGCgauaugUCgUCGUuGCUCu -3'
miRNA:   3'- cgCGGGACCuACAUCG------AG-AGCA-UGAG- -5'
14610 5' -54.3 NC_003521.1 + 152830 0.68 0.944637
Target:  5'- aGCGCCCUGGucuucAGUUCcaacUCgGUGCUCu -3'
miRNA:   3'- -CGCGGGACCuaca-UCGAG----AG-CAUGAG- -5'
14610 5' -54.3 NC_003521.1 + 212517 0.68 0.939201
Target:  5'- cGCGCCg-GGGUcgcugccgcuGCUCUCGUugUCg -3'
miRNA:   3'- -CGCGGgaCCUAcau-------CGAGAGCAugAG- -5'
14610 5' -54.3 NC_003521.1 + 154049 0.69 0.930425
Target:  5'- gGUGCCCaUGGAgaucaAGCUCUCGcgccuCUCg -3'
miRNA:   3'- -CGCGGG-ACCUaca--UCGAGAGCau---GAG- -5'
14610 5' -54.3 NC_003521.1 + 84355 0.69 0.914129
Target:  5'- aGCGCcuccuccgccuCCUGGAUGUAGCUgUgGUAg-- -3'
miRNA:   3'- -CGCG-----------GGACCUACAUCGAgAgCAUgag -5'
14610 5' -54.3 NC_003521.1 + 175246 0.69 0.911798
Target:  5'- uGCuGuCCCUGGcgGUAGCgugcguaguccugCUCGUAgUCg -3'
miRNA:   3'- -CG-C-GGGACCuaCAUCGa------------GAGCAUgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.