Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14610 | 5' | -54.3 | NC_003521.1 | + | 44642 | 0.67 | 0.968219 |
Target: 5'- uGCGCCUgUGGGUGUuggagaagugcaaccGGCUCUgcgacgaccUGUACUUc -3' miRNA: 3'- -CGCGGG-ACCUACA---------------UCGAGA---------GCAUGAG- -5' |
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14610 | 5' | -54.3 | NC_003521.1 | + | 213117 | 0.66 | 0.975368 |
Target: 5'- aCGCgCUGGGUGUGGCg-UgGUGCg- -3' miRNA: 3'- cGCGgGACCUACAUCGagAgCAUGag -5' |
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14610 | 5' | -54.3 | NC_003521.1 | + | 38716 | 0.66 | 0.975368 |
Target: 5'- gGCGUCCUGG-UGgcGCUacuuaagcgCGUGCUg -3' miRNA: 3'- -CGCGGGACCuACauCGAga-------GCAUGAg -5' |
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14610 | 5' | -54.3 | NC_003521.1 | + | 63491 | 0.66 | 0.977778 |
Target: 5'- aGCGUCCUGGAccgGgcGCUgaUCGacaaaaUGCUCa -3' miRNA: 3'- -CGCGGGACCUa--CauCGAg-AGC------AUGAG- -5' |
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14610 | 5' | -54.3 | NC_003521.1 | + | 47398 | 0.66 | 0.977778 |
Target: 5'- gGCGCUgcgcgagcggagCUGGAUGUAGCaucgCUCGgGC-Ca -3' miRNA: 3'- -CGCGG------------GACCUACAUCGa---GAGCaUGaG- -5' |
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14610 | 5' | -54.3 | NC_003521.1 | + | 227624 | 0.66 | 0.980009 |
Target: 5'- uCGUCCUGGGUGaAGUUggCGUGCa- -3' miRNA: 3'- cGCGGGACCUACaUCGAgaGCAUGag -5' |
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14610 | 5' | -54.3 | NC_003521.1 | + | 45234 | 0.66 | 0.980222 |
Target: 5'- uGCGCaaCCUGGAgcUGUAGCgucgguuaaccgcugCUgGUACUg -3' miRNA: 3'- -CGCG--GGACCU--ACAUCGa--------------GAgCAUGAg -5' |
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14610 | 5' | -54.3 | NC_003521.1 | + | 129249 | 0.66 | 0.982069 |
Target: 5'- cGCGCggcaCCUGGAUGUGGaagagcaUCUugccCGUGgUCa -3' miRNA: 3'- -CGCG----GGACCUACAUCg------AGA----GCAUgAG- -5' |
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14610 | 5' | -54.3 | NC_003521.1 | + | 35838 | 0.66 | 0.982069 |
Target: 5'- cGCGCCgaGGAUGUagAGUUCaUCGcggGCg- -3' miRNA: 3'- -CGCGGgaCCUACA--UCGAG-AGCa--UGag -5' |
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14610 | 5' | -54.3 | NC_003521.1 | + | 32990 | 0.66 | 0.983226 |
Target: 5'- -aGCCCUGGcgGaugaagccccgcaGGCUCUCGgccaGCUUg -3' miRNA: 3'- cgCGGGACCuaCa------------UCGAGAGCa---UGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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