miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14612 3' -53.3 NC_003521.1 + 30773 0.66 0.986469
Target:  5'- -aGGCGAUCAaaGCGcUGGAUGugggcgcgguagcgcACCGAg -3'
miRNA:   3'- caCCGCUAGUacCGC-AUCUAC---------------UGGCU- -5'
14612 3' -53.3 NC_003521.1 + 167000 0.66 0.985816
Target:  5'- -gGGCGGaguUGGCGUAGAaGGuCCGGu -3'
miRNA:   3'- caCCGCUaguACCGCAUCUaCU-GGCU- -5'
14612 3' -53.3 NC_003521.1 + 108885 0.66 0.985816
Target:  5'- -aGGCGAUauaucagguaaAUGGCcacGAUGGCCGAc -3'
miRNA:   3'- caCCGCUAg----------UACCGcauCUACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 98217 0.66 0.992432
Target:  5'- -cGGCGggCAgcGGCGUGGGaGGCgGGg -3'
miRNA:   3'- caCCGCuaGUa-CCGCAUCUaCUGgCU- -5'
14612 3' -53.3 NC_003521.1 + 164849 0.66 0.988714
Target:  5'- -cGGCGAgggccgcuccucgUCGggGGUGUguaacuacgAGGUGGCCGAg -3'
miRNA:   3'- caCCGCU-------------AGUa-CCGCA---------UCUACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 36583 0.66 0.992432
Target:  5'- aUGcGCGAacuggCcUGGCGgcGGGUGGCCGAc -3'
miRNA:   3'- cAC-CGCUa----GuACCGCa-UCUACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 108948 0.66 0.992432
Target:  5'- -cGGCuGUCgGUGGCGUcuAUGACCa- -3'
miRNA:   3'- caCCGcUAG-UACCGCAucUACUGGcu -5'
14612 3' -53.3 NC_003521.1 + 160572 0.66 0.991014
Target:  5'- aGUGGUGGUCGUGGUuucuuuuuuggguuGUuuGGAUGcUCGAu -3'
miRNA:   3'- -CACCGCUAGUACCG--------------CA--UCUACuGGCU- -5'
14612 3' -53.3 NC_003521.1 + 13630 0.66 0.990168
Target:  5'- cUGGUGAUCGUGuGCcucaugGGGUGGuuGAa -3'
miRNA:   3'- cACCGCUAGUAC-CGca----UCUACUggCU- -5'
14612 3' -53.3 NC_003521.1 + 168485 0.66 0.988853
Target:  5'- -aGGuCGAUCAUgGGCGgcGA-GACgGAg -3'
miRNA:   3'- caCC-GCUAGUA-CCGCauCUaCUGgCU- -5'
14612 3' -53.3 NC_003521.1 + 49096 0.66 0.987405
Target:  5'- -gGGCGAUauccacaaaGUGcGCGUGG-UGACCGc -3'
miRNA:   3'- caCCGCUAg--------UAC-CGCAUCuACUGGCu -5'
14612 3' -53.3 NC_003521.1 + 12918 0.66 0.987405
Target:  5'- cUGGCGcUgGUGGCG-GGAccagGGCCGGg -3'
miRNA:   3'- cACCGCuAgUACCGCaUCUa---CUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 143060 0.66 0.985816
Target:  5'- aUGGUGGUgGUGGCGccGGUGGCg-- -3'
miRNA:   3'- cACCGCUAgUACCGCauCUACUGgcu -5'
14612 3' -53.3 NC_003521.1 + 204733 0.67 0.982183
Target:  5'- gGUGGCGAggGUGGUGaUGGAggcGCCGc -3'
miRNA:   3'- -CACCGCUagUACCGC-AUCUac-UGGCu -5'
14612 3' -53.3 NC_003521.1 + 147402 0.67 0.97548
Target:  5'- aUGGCGGaucgCGUGGCGgugaGGAcGACCa- -3'
miRNA:   3'- cACCGCUa---GUACCGCa---UCUaCUGGcu -5'
14612 3' -53.3 NC_003521.1 + 37222 0.67 0.984078
Target:  5'- -aGGCGGccUCG-GGgGUGGA-GACCGGa -3'
miRNA:   3'- caCCGCU--AGUaCCgCAUCUaCUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 19155 0.67 0.97548
Target:  5'- cGUGGUGAccgagagCAcGGCGcuGGUGGCCGAc -3'
miRNA:   3'- -CACCGCUa------GUaCCGCauCUACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 41640 0.67 0.97548
Target:  5'- cGUGGCGccCGUGGUcauGAUGACCu- -3'
miRNA:   3'- -CACCGCuaGUACCGcauCUACUGGcu -5'
14612 3' -53.3 NC_003521.1 + 77572 0.67 0.977892
Target:  5'- -cGGCG-UCAaGGCGUugaAGAccgccgUGGCCGAa -3'
miRNA:   3'- caCCGCuAGUaCCGCA---UCU------ACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 27491 0.67 0.980337
Target:  5'- uGUGGCGGUCGgagaacuccacggggGGCGU-GcgGcCCGAg -3'
miRNA:   3'- -CACCGCUAGUa--------------CCGCAuCuaCuGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.