miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14612 3' -53.3 NC_003521.1 + 221042 1.1 0.007531
Target:  5'- cGUGGCGAUCAUGGCGUAGAUGACCGAg -3'
miRNA:   3'- -CACCGCUAGUACCGCAUCUACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 18738 0.86 0.226296
Target:  5'- -cGGCGAUCGUGGCGgcGGUGgcGCCGAc -3'
miRNA:   3'- caCCGCUAGUACCGCauCUAC--UGGCU- -5'
14612 3' -53.3 NC_003521.1 + 19944 0.79 0.470882
Target:  5'- -gGGCGAgaUCGUGGUG-AGGUGGCCGGg -3'
miRNA:   3'- caCCGCU--AGUACCGCaUCUACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 217918 0.76 0.665458
Target:  5'- cGUGGUGGUCcuUGGCGUacugcugcagccacAGGUGACCGc -3'
miRNA:   3'- -CACCGCUAGu-ACCGCA--------------UCUACUGGCu -5'
14612 3' -53.3 NC_003521.1 + 122721 0.75 0.682561
Target:  5'- -aGGCGGUCGUGGuCGUGGGcgacggcgccgccgaUGGCUGAc -3'
miRNA:   3'- caCCGCUAGUACC-GCAUCU---------------ACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 49881 0.75 0.69855
Target:  5'- aUGGCGGUCGUGGCGUGcGUGuGgCGAc -3'
miRNA:   3'- cACCGCUAGUACCGCAUcUAC-UgGCU- -5'
14612 3' -53.3 NC_003521.1 + 227969 0.75 0.732019
Target:  5'- gGUGGCGAguaauaaCAacacgagcccccaacUGGCGUAGGUGGCCa- -3'
miRNA:   3'- -CACCGCUa------GU---------------ACCGCAUCUACUGGcu -5'
14612 3' -53.3 NC_003521.1 + 81094 0.74 0.737834
Target:  5'- -cGGCGAUgGgcuUGuCGUAGAUGGCCGAg -3'
miRNA:   3'- caCCGCUAgU---ACcGCAUCUACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 199523 0.73 0.793876
Target:  5'- uGUGGCGAagccCAccguacagcUGGaguaGUAGAUGACCGAg -3'
miRNA:   3'- -CACCGCUa---GU---------ACCg---CAUCUACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 102853 0.73 0.793876
Target:  5'- -gGGCGccCGUGGCGUAGGUcugGGCCGu -3'
miRNA:   3'- caCCGCuaGUACCGCAUCUA---CUGGCu -5'
14612 3' -53.3 NC_003521.1 + 101839 0.73 0.793876
Target:  5'- gGUGGCGGgcUCcgGGuUGUGGAUGGCgGAc -3'
miRNA:   3'- -CACCGCU--AGuaCC-GCAUCUACUGgCU- -5'
14612 3' -53.3 NC_003521.1 + 228742 0.73 0.820086
Target:  5'- cGUGGUGAgcagcggCGUgcgcaucuugucGGCGUAGAUGACCu- -3'
miRNA:   3'- -CACCGCUa------GUA------------CCGCAUCUACUGGcu -5'
14612 3' -53.3 NC_003521.1 + 214023 0.71 0.895547
Target:  5'- -cGGCGcUCAgggUGGCGUuagaccGGUGGCCGGa -3'
miRNA:   3'- caCCGCuAGU---ACCGCAu-----CUACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 79043 0.71 0.895547
Target:  5'- -cGGCGugacagaCAUGGCGUAGggGGuCCGGg -3'
miRNA:   3'- caCCGCua-----GUACCGCAUCuaCU-GGCU- -5'
14612 3' -53.3 NC_003521.1 + 229069 0.71 0.901931
Target:  5'- -aGGCaGUCAcccaggcGGCGUGGAUGGCCa- -3'
miRNA:   3'- caCCGcUAGUa------CCGCAUCUACUGGcu -5'
14612 3' -53.3 NC_003521.1 + 136024 0.7 0.908087
Target:  5'- -cGGgGAUCAgcgaGGUGgcGGUGAUCGAg -3'
miRNA:   3'- caCCgCUAGUa---CCGCauCUACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 108032 0.7 0.925164
Target:  5'- -cGGCG-UCAggcGGCGgcgGGAUGACgCGAc -3'
miRNA:   3'- caCCGCuAGUa--CCGCa--UCUACUG-GCU- -5'
14612 3' -53.3 NC_003521.1 + 230231 0.69 0.944221
Target:  5'- cGUGGUGAUCGUaagccccGuaGUGGAUGccGCCGAu -3'
miRNA:   3'- -CACCGCUAGUA-------CcgCAUCUAC--UGGCU- -5'
14612 3' -53.3 NC_003521.1 + 77721 0.69 0.948959
Target:  5'- -cGGUGGUCGUGGCGcuggcgcccgAGGacgGGCCGGc -3'
miRNA:   3'- caCCGCUAGUACCGCa---------UCUa--CUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 173466 0.69 0.953027
Target:  5'- -cGGCGGUaGUGGCGUcGAU-ACCGGc -3'
miRNA:   3'- caCCGCUAgUACCGCAuCUAcUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.