miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14612 3' -53.3 NC_003521.1 + 18738 0.86 0.226296
Target:  5'- -cGGCGAUCGUGGCGgcGGUGgcGCCGAc -3'
miRNA:   3'- caCCGCUAGUACCGCauCUAC--UGGCU- -5'
14612 3' -53.3 NC_003521.1 + 108885 0.66 0.985816
Target:  5'- -aGGCGAUauaucagguaaAUGGCcacGAUGGCCGAc -3'
miRNA:   3'- caCCGCUAg----------UACCGcauCUACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 226497 0.67 0.984078
Target:  5'- -gGGUG-UCGUaGGCGUAGAUG-CgCGAa -3'
miRNA:   3'- caCCGCuAGUA-CCGCAUCUACuG-GCU- -5'
14612 3' -53.3 NC_003521.1 + 27491 0.67 0.980337
Target:  5'- uGUGGCGGUCGgagaacuccacggggGGCGU-GcgGcCCGAg -3'
miRNA:   3'- -CACCGCUAGUa--------------CCGCAuCuaCuGGCU- -5'
14612 3' -53.3 NC_003521.1 + 77572 0.67 0.977892
Target:  5'- -cGGCG-UCAaGGCGUugaAGAccgccgUGGCCGAa -3'
miRNA:   3'- caCCGCuAGUaCCGCA---UCU------ACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 98430 0.67 0.977892
Target:  5'- gGUGGCGGggcgGGCGUAcGGUGAgaCGAc -3'
miRNA:   3'- -CACCGCUaguaCCGCAU-CUACUg-GCU- -5'
14612 3' -53.3 NC_003521.1 + 41640 0.67 0.97548
Target:  5'- cGUGGCGccCGUGGUcauGAUGACCu- -3'
miRNA:   3'- -CACCGCuaGUACCGcauCUACUGGcu -5'
14612 3' -53.3 NC_003521.1 + 19155 0.67 0.97548
Target:  5'- cGUGGUGAccgagagCAcGGCGcuGGUGGCCGAc -3'
miRNA:   3'- -CACCGCUa------GUaCCGCauCUACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 105865 0.68 0.967099
Target:  5'- aGUGGCgcgugcccacGAUCAgGGCGcAGAUG-CCGGg -3'
miRNA:   3'- -CACCG----------CUAGUaCCGCaUCUACuGGCU- -5'
14612 3' -53.3 NC_003521.1 + 116469 0.68 0.963903
Target:  5'- cGUGGUGGgacaCGUGGCGgcGAUGAa-GAg -3'
miRNA:   3'- -CACCGCUa---GUACCGCauCUACUggCU- -5'
14612 3' -53.3 NC_003521.1 + 39875 0.69 0.953027
Target:  5'- -cGGCGAUCG-GGCGccguacagGGuguUGGCCGAc -3'
miRNA:   3'- caCCGCUAGUaCCGCa-------UCu--ACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 173466 0.69 0.953027
Target:  5'- -cGGCGGUaGUGGCGUcGAU-ACCGGc -3'
miRNA:   3'- caCCGCUAgUACCGCAuCUAcUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 214023 0.71 0.895547
Target:  5'- -cGGCGcUCAgggUGGCGUuagaccGGUGGCCGGa -3'
miRNA:   3'- caCCGCuAGU---ACCGCAu-----CUACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 79043 0.71 0.895547
Target:  5'- -cGGCGugacagaCAUGGCGUAGggGGuCCGGg -3'
miRNA:   3'- caCCGCua-----GUACCGCAUCuaCU-GGCU- -5'
14612 3' -53.3 NC_003521.1 + 228742 0.73 0.820086
Target:  5'- cGUGGUGAgcagcggCGUgcgcaucuugucGGCGUAGAUGACCu- -3'
miRNA:   3'- -CACCGCUa------GUA------------CCGCAUCUACUGGcu -5'
14612 3' -53.3 NC_003521.1 + 102853 0.73 0.793876
Target:  5'- -gGGCGccCGUGGCGUAGGUcugGGCCGu -3'
miRNA:   3'- caCCGCuaGUACCGCAUCUA---CUGGCu -5'
14612 3' -53.3 NC_003521.1 + 81094 0.74 0.737834
Target:  5'- -cGGCGAUgGgcuUGuCGUAGAUGGCCGAg -3'
miRNA:   3'- caCCGCUAgU---ACcGCAUCUACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 49881 0.75 0.69855
Target:  5'- aUGGCGGUCGUGGCGUGcGUGuGgCGAc -3'
miRNA:   3'- cACCGCUAGUACCGCAUcUAC-UgGCU- -5'
14612 3' -53.3 NC_003521.1 + 217918 0.76 0.665458
Target:  5'- cGUGGUGGUCcuUGGCGUacugcugcagccacAGGUGACCGc -3'
miRNA:   3'- -CACCGCUAGu-ACCGCA--------------UCUACUGGCu -5'
14612 3' -53.3 NC_003521.1 + 221042 1.1 0.007531
Target:  5'- cGUGGCGAUCAUGGCGUAGAUGACCGAg -3'
miRNA:   3'- -CACCGCUAGUACCGCAUCUACUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.