miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14612 3' -53.3 NC_003521.1 + 168100 0.67 0.980124
Target:  5'- -cGGCGAagAccgaggaGGCGUGGAUcGCCGAg -3'
miRNA:   3'- caCCGCUagUa------CCGCAUCUAcUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 19944 0.79 0.470882
Target:  5'- -gGGCGAgaUCGUGGUG-AGGUGGCCGGg -3'
miRNA:   3'- caCCGCU--AGUACCGCaUCUACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 122721 0.75 0.682561
Target:  5'- -aGGCGGUCGUGGuCGUGGGcgacggcgccgccgaUGGCUGAc -3'
miRNA:   3'- caCCGCUAGUACC-GCAUCU---------------ACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 77721 0.69 0.948959
Target:  5'- -cGGUGGUCGUGGCGcuggcgcccgAGGacgGGCCGGc -3'
miRNA:   3'- caCCGCUAGUACCGCa---------UCUa--CUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 167728 0.69 0.956871
Target:  5'- -cGGUGGauugCGUGGCGcUGcGGUGGCCGGc -3'
miRNA:   3'- caCCGCUa---GUACCGC-AU-CUACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 227969 0.75 0.732019
Target:  5'- gGUGGCGAguaauaaCAacacgagcccccaacUGGCGUAGGUGGCCa- -3'
miRNA:   3'- -CACCGCUa------GU---------------ACCGCAUCUACUGGcu -5'
14612 3' -53.3 NC_003521.1 + 136024 0.7 0.908087
Target:  5'- -cGGgGAUCAgcgaGGUGgcGGUGAUCGAg -3'
miRNA:   3'- caCCgCUAGUa---CCGCauCUACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 230231 0.69 0.944221
Target:  5'- cGUGGUGAUCGUaagccccGuaGUGGAUGccGCCGAu -3'
miRNA:   3'- -CACCGCUAGUA-------CcgCAUCUAC--UGGCU- -5'
14612 3' -53.3 NC_003521.1 + 147402 0.67 0.97548
Target:  5'- aUGGCGGaucgCGUGGCGgugaGGAcGACCa- -3'
miRNA:   3'- cACCGCUa---GUACCGCa---UCUaCUGGcu -5'
14612 3' -53.3 NC_003521.1 + 164849 0.66 0.988714
Target:  5'- -cGGCGAgggccgcuccucgUCGggGGUGUguaacuacgAGGUGGCCGAg -3'
miRNA:   3'- caCCGCU-------------AGUa-CCGCA---------UCUACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 98217 0.66 0.992432
Target:  5'- -cGGCGggCAgcGGCGUGGGaGGCgGGg -3'
miRNA:   3'- caCCGCuaGUa-CCGCAUCUaCUGgCU- -5'
14612 3' -53.3 NC_003521.1 + 101839 0.73 0.793876
Target:  5'- gGUGGCGGgcUCcgGGuUGUGGAUGGCgGAc -3'
miRNA:   3'- -CACCGCU--AGuaCC-GCAUCUACUGgCU- -5'
14612 3' -53.3 NC_003521.1 + 199523 0.73 0.793876
Target:  5'- uGUGGCGAagccCAccguacagcUGGaguaGUAGAUGACCGAg -3'
miRNA:   3'- -CACCGCUa---GU---------ACCg---CAUCUACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 195354 0.68 0.972882
Target:  5'- gGUGGUGggCcgGGUGaAGGUGAcgcCCGAg -3'
miRNA:   3'- -CACCGCuaGuaCCGCaUCUACU---GGCU- -5'
14612 3' -53.3 NC_003521.1 + 199463 0.68 0.972882
Target:  5'- cUGGCGcgCGUaGGUgcgacgGUGGAUGACgCGAu -3'
miRNA:   3'- cACCGCuaGUA-CCG------CAUCUACUG-GCU- -5'
14612 3' -53.3 NC_003521.1 + 229069 0.71 0.901931
Target:  5'- -aGGCaGUCAcccaggcGGCGUGGAUGGCCa- -3'
miRNA:   3'- caCCGcUAGUa------CCGCAUCUACUGGcu -5'
14612 3' -53.3 NC_003521.1 + 37222 0.67 0.984078
Target:  5'- -aGGCGGccUCG-GGgGUGGA-GACCGGa -3'
miRNA:   3'- caCCGCU--AGUaCCgCAUCUaCUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 36583 0.66 0.992432
Target:  5'- aUGcGCGAacuggCcUGGCGgcGGGUGGCCGAc -3'
miRNA:   3'- cAC-CGCUa----GuACCGCa-UCUACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 108032 0.7 0.925164
Target:  5'- -cGGCG-UCAggcGGCGgcgGGAUGACgCGAc -3'
miRNA:   3'- caCCGCuAGUa--CCGCa--UCUACUG-GCU- -5'
14612 3' -53.3 NC_003521.1 + 86280 0.68 0.967099
Target:  5'- -cGGCGAUCAccgUGGUGccGGUGAUCa- -3'
miRNA:   3'- caCCGCUAGU---ACCGCauCUACUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.