miRNA display CGI


Results 41 - 60 of 382 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14612 5' -59.7 NC_003521.1 + 39445 0.74 0.456994
Target:  5'- --cGGccGAGCCCGGCGCCGaggGCCGCg -3'
miRNA:   3'- ucaCC--UUCGGGCUGCGGCag-UGGCGg -5'
14612 5' -59.7 NC_003521.1 + 157206 0.74 0.465697
Target:  5'- gGGUGGGAGCgacuCCaGuccCGCCGUCauacGCCGCCg -3'
miRNA:   3'- -UCACCUUCG----GG-Cu--GCGGCAG----UGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 127011 0.74 0.465697
Target:  5'- cGUGGcgguGCCCGACGaCGcCGCCGCg -3'
miRNA:   3'- uCACCuu--CGGGCUGCgGCaGUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 44087 0.74 0.465697
Target:  5'- cGGUGcAGGCgCCGcCGCCaccaccGUCGCCGCCg -3'
miRNA:   3'- -UCACcUUCG-GGCuGCGG------CAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 126965 0.73 0.474487
Target:  5'- --cGGAA-CCCG-CGCCGUCGUCGCCg -3'
miRNA:   3'- ucaCCUUcGGGCuGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 5683 0.73 0.480689
Target:  5'- --cGGgcGCCCGuccgcggggaacggGCGCCGUCACCGg- -3'
miRNA:   3'- ucaCCuuCGGGC--------------UGCGGCAGUGGCgg -5'
14612 5' -59.7 NC_003521.1 + 74915 0.73 0.481578
Target:  5'- cGGUGGAgucGGCCCGGCaGCgCGgggugguguaccCGCCGCCc -3'
miRNA:   3'- -UCACCU---UCGGGCUG-CG-GCa-----------GUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 98142 0.73 0.483359
Target:  5'- cGUGGuAGCugCUGcCGCCGUCGCUGCUg -3'
miRNA:   3'- uCACCuUCG--GGCuGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 107636 0.73 0.483359
Target:  5'- --cGGucGuCCCGAuCGCCGagGCCGCCa -3'
miRNA:   3'- ucaCCuuC-GGGCU-GCGGCagUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 166120 0.73 0.483359
Target:  5'- --aGGGAGCCgcugccgcggCGcCGCCGUCGCUGCUg -3'
miRNA:   3'- ucaCCUUCGG----------GCuGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 135648 0.73 0.492309
Target:  5'- cGGcgGGggGCCCagcgucggcGGCGUCGUCACCaCCu -3'
miRNA:   3'- -UCa-CCuuCGGG---------CUGCGGCAGUGGcGG- -5'
14612 5' -59.7 NC_003521.1 + 97170 0.73 0.500429
Target:  5'- uGGUGGAagaGGUCCGuguggaaGCGCCGgugCACCGUg -3'
miRNA:   3'- -UCACCU---UCGGGC-------UGCGGCa--GUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 155711 0.73 0.501335
Target:  5'- cGUGcc-GCCCGcCGCUGcCGCCGCCg -3'
miRNA:   3'- uCACcuuCGGGCuGCGGCaGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 32863 0.73 0.501335
Target:  5'- -cUGGAGGCCgaucgguuUGGCGcCCG-CGCCGCCg -3'
miRNA:   3'- ucACCUUCGG--------GCUGC-GGCaGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 145659 0.73 0.509521
Target:  5'- uGGUGG--GCCCGGCcggccgacuccuuGCCGUCggcgcgGCCGCCu -3'
miRNA:   3'- -UCACCuuCGGGCUG-------------CGGCAG------UGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 194166 0.73 0.509521
Target:  5'- --cGGAaccguuuacGGCuacgaucccgccgCCGACGCCGUCuACCGCCu -3'
miRNA:   3'- ucaCCU---------UCG-------------GGCUGCGGCAG-UGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 75978 0.73 0.510433
Target:  5'- gAGgaaGAAGUCUGGCGCCG--GCCGCCg -3'
miRNA:   3'- -UCac-CUUCGGGCUGCGGCagUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 216360 0.73 0.516843
Target:  5'- gGGUGuGAGGCCCGugGuCCGcgCGgaccuguuccgagcCCGCCg -3'
miRNA:   3'- -UCAC-CUUCGGGCugC-GGCa-GU--------------GGCGG- -5'
14612 5' -59.7 NC_003521.1 + 129398 0.73 0.5196
Target:  5'- aAGUGGAuguuguagcGCUCGGgGUCGUCGCCGUa -3'
miRNA:   3'- -UCACCUu--------CGGGCUgCGGCAGUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 14437 0.73 0.5196
Target:  5'- cGUGGugcacacGGCCCugcGGCGgCGUCAgCCGCCg -3'
miRNA:   3'- uCACCu------UCGGG---CUGCgGCAGU-GGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.