miRNA display CGI


Results 1 - 20 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14613 5' -60.8 NC_003521.1 + 29351 0.66 0.80747
Target:  5'- gUGcGCUGCGCccuGCGccuCAUGG-CCUGCc -3'
miRNA:   3'- gAC-CGGCGCGu--CGCu--GUACCaGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 152135 0.66 0.80747
Target:  5'- gCUGGucCCGUGCAGCaguucGGCGcGGUaCUCGCu -3'
miRNA:   3'- -GACC--GGCGCGUCG-----CUGUaCCA-GGGCG- -5'
14613 5' -60.8 NC_003521.1 + 116795 0.66 0.80747
Target:  5'- gCUGGCCGUcuacgGCcGCGACcccgacugGGUgCUGCa -3'
miRNA:   3'- -GACCGGCG-----CGuCGCUGua------CCAgGGCG- -5'
14613 5' -60.8 NC_003521.1 + 213110 0.66 0.799117
Target:  5'- -cGGCucgaCGCGCuggguGUGGCGUGGUgcggCCGCa -3'
miRNA:   3'- gaCCG----GCGCGu----CGCUGUACCAg---GGCG- -5'
14613 5' -60.8 NC_003521.1 + 201820 0.66 0.799117
Target:  5'- -cGGCCGUGCAGCGcCAca-UCCaccaGCg -3'
miRNA:   3'- gaCCGGCGCGUCGCuGUaccAGGg---CG- -5'
14613 5' -60.8 NC_003521.1 + 168583 0.66 0.79063
Target:  5'- -cGGCUGacccaGCGGCGGCAUGGacaugggCUGCu -3'
miRNA:   3'- gaCCGGCg----CGUCGCUGUACCag-----GGCG- -5'
14613 5' -60.8 NC_003521.1 + 201507 0.66 0.799117
Target:  5'- cCUaGCCGC-CcGCGACGccgacgaaUGGUUCCGCu -3'
miRNA:   3'- -GAcCGGCGcGuCGCUGU--------ACCAGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 166859 0.66 0.79063
Target:  5'- -cGGUgGCGCGGCGggcGCA-GGUCguacaucaaguCCGCg -3'
miRNA:   3'- gaCCGgCGCGUCGC---UGUaCCAG-----------GGCG- -5'
14613 5' -60.8 NC_003521.1 + 87604 0.66 0.799117
Target:  5'- -aGGCCGUguuguagcaGguGUGGCAgcaGGUgCCGCc -3'
miRNA:   3'- gaCCGGCG---------CguCGCUGUa--CCAgGGCG- -5'
14613 5' -60.8 NC_003521.1 + 137666 0.66 0.79063
Target:  5'- -cGcGCCGUGC-GCGACGagauccgccUGGUgCUGCa -3'
miRNA:   3'- gaC-CGGCGCGuCGCUGU---------ACCAgGGCG- -5'
14613 5' -60.8 NC_003521.1 + 72231 0.66 0.796585
Target:  5'- aCUcGCCGUGCacguacuugaggaaGGCGGCGuacuucUGG-CCCGCg -3'
miRNA:   3'- -GAcCGGCGCG--------------UCGCUGU------ACCaGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 228657 0.66 0.79063
Target:  5'- --cGCCGCGaUAGCGACAaGccaCCCGCu -3'
miRNA:   3'- gacCGGCGC-GUCGCUGUaCca-GGGCG- -5'
14613 5' -60.8 NC_003521.1 + 207197 0.66 0.79063
Target:  5'- gUGaGCCGCuCGGCGGCAUcGUCCUcCg -3'
miRNA:   3'- gAC-CGGCGcGUCGCUGUAcCAGGGcG- -5'
14613 5' -60.8 NC_003521.1 + 119175 0.66 0.80747
Target:  5'- -aGGCCggcGCGCAGCugGAUcUGGggCCGCu -3'
miRNA:   3'- gaCCGG---CGCGUCG--CUGuACCagGGCG- -5'
14613 5' -60.8 NC_003521.1 + 33654 0.66 0.80747
Target:  5'- -cGGCCagcagaGCGggaucCAGCGACcggccGUGG-CCCGCa -3'
miRNA:   3'- gaCCGG------CGC-----GUCGCUG-----UACCaGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 28385 0.66 0.831664
Target:  5'- gUGGCaCGUGUcGCGACGccuggccaucaUGGgCCUGCu -3'
miRNA:   3'- gACCG-GCGCGuCGCUGU-----------ACCaGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 128679 0.66 0.80747
Target:  5'- -aGGcCCGagaGCAGCGACAUGaugaUCUGCa -3'
miRNA:   3'- gaCC-GGCg--CGUCGCUGUACca--GGGCG- -5'
14613 5' -60.8 NC_003521.1 + 938 0.66 0.80747
Target:  5'- -aGGCCGCu--GCGACuggaacGUGGUCCgcUGCa -3'
miRNA:   3'- gaCCGGCGcguCGCUG------UACCAGG--GCG- -5'
14613 5' -60.8 NC_003521.1 + 110705 0.66 0.80747
Target:  5'- -aGGUCgaagGCGCGGUacGACGgcaGGUCCCGg -3'
miRNA:   3'- gaCCGG----CGCGUCG--CUGUa--CCAGGGCg -5'
14613 5' -60.8 NC_003521.1 + 166471 0.66 0.799117
Target:  5'- aCUGGCCGUagccgcgcaGCAGCGcCAUccagcGGggCgCCGCg -3'
miRNA:   3'- -GACCGGCG---------CGUCGCuGUA-----CCa-G-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.