miRNA display CGI


Results 1 - 20 of 288 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14613 5' -60.8 NC_003521.1 + 119 0.67 0.782018
Target:  5'- -gGGUCGuCGCGGgGAC-UGGUUUgGCg -3'
miRNA:   3'- gaCCGGC-GCGUCgCUGuACCAGGgCG- -5'
14613 5' -60.8 NC_003521.1 + 938 0.66 0.80747
Target:  5'- -aGGCCGCu--GCGACuggaacGUGGUCCgcUGCa -3'
miRNA:   3'- gaCCGGCGcguCGCUG------UACCAGG--GCG- -5'
14613 5' -60.8 NC_003521.1 + 1032 0.69 0.623618
Target:  5'- --cGCCGCGCAGCcAgAUGG-CCgGCg -3'
miRNA:   3'- gacCGGCGCGUCGcUgUACCaGGgCG- -5'
14613 5' -60.8 NC_003521.1 + 1279 0.66 0.799117
Target:  5'- cCUaGCCGC-CcGCGACGccgacgaaUGGUUCCGCu -3'
miRNA:   3'- -GAcCGGCGcGuCGCUGU--------ACCAGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 1450 0.71 0.547466
Target:  5'- gCUGcGCCGC-CGGUGGCAgcacacgGGcaUCCCGCu -3'
miRNA:   3'- -GAC-CGGCGcGUCGCUGUa------CC--AGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 1593 0.66 0.799117
Target:  5'- -cGGCCGUGCAGCGcCAca-UCCaccaGCg -3'
miRNA:   3'- gaCCGGCGCGUCGCuGUaccAGGg---CG- -5'
14613 5' -60.8 NC_003521.1 + 4604 0.71 0.510433
Target:  5'- -gGGCCGCGCGGgGgaACAUGaccucaCCCGCu -3'
miRNA:   3'- gaCCGGCGCGUCgC--UGUACca----GGGCG- -5'
14613 5' -60.8 NC_003521.1 + 5334 0.73 0.43142
Target:  5'- -cGGCCGCGacucCGGCGAUAgUGGUaagCCCGUg -3'
miRNA:   3'- gaCCGGCGC----GUCGCUGU-ACCA---GGGCG- -5'
14613 5' -60.8 NC_003521.1 + 6084 0.7 0.585305
Target:  5'- -cGGCCgGUGCGGCGGC---GUUCCGCc -3'
miRNA:   3'- gaCCGG-CGCGUCGCUGuacCAGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 6392 0.69 0.671582
Target:  5'- -gGcGCCGCagcuaccgcgGCGGCGACG-GGUCuuGCc -3'
miRNA:   3'- gaC-CGGCG----------CGUCGCUGUaCCAGggCG- -5'
14613 5' -60.8 NC_003521.1 + 6629 0.75 0.310478
Target:  5'- -aGGCCGCGC-GCGAacgcuUGG-CCCGCu -3'
miRNA:   3'- gaCCGGCGCGuCGCUgu---ACCaGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 7737 0.67 0.773287
Target:  5'- -gGGCgGCGCgagcggcggaGGCGGCGgcaGUCCCaGCa -3'
miRNA:   3'- gaCCGgCGCG----------UCGCUGUac-CAGGG-CG- -5'
14613 5' -60.8 NC_003521.1 + 13927 0.76 0.290886
Target:  5'- -aGGCCGCGCuGGcCGcCGUGGUgccCCCGCa -3'
miRNA:   3'- gaCCGGCGCG-UC-GCuGUACCA---GGGCG- -5'
14613 5' -60.8 NC_003521.1 + 14448 0.69 0.623618
Target:  5'- -cGGCCcUGCGGCGGCGUcagccgccGcUCCCGCg -3'
miRNA:   3'- gaCCGGcGCGUCGCUGUA--------CcAGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 16263 0.69 0.633225
Target:  5'- -cGGCUGCGCuGCcGC-UGGuUCCUGCu -3'
miRNA:   3'- gaCCGGCGCGuCGcUGuACC-AGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 17419 0.68 0.718832
Target:  5'- --cGCCGCGCcggGGCGccACAcGG-CCCGCg -3'
miRNA:   3'- gacCGGCGCG---UCGC--UGUaCCaGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 17763 0.66 0.813235
Target:  5'- aCUGGCCGUaccGcCGGCGGCGgacGGUCaggugaaggaaacaUCGCa -3'
miRNA:   3'- -GACCGGCG---C-GUCGCUGUa--CCAG--------------GGCG- -5'
14613 5' -60.8 NC_003521.1 + 18302 0.71 0.507697
Target:  5'- cCUGGCCuauggacccuucguGCcCAGCGGCGUGGUgCUGUu -3'
miRNA:   3'- -GACCGG--------------CGcGUCGCUGUACCAgGGCG- -5'
14613 5' -60.8 NC_003521.1 + 18471 0.69 0.671582
Target:  5'- -gGGCUGCGCGGCGAguguCGccUGGaggagcugCCCGUg -3'
miRNA:   3'- gaCCGGCGCGUCGCU----GU--ACCa-------GGGCG- -5'
14613 5' -60.8 NC_003521.1 + 18766 0.71 0.547466
Target:  5'- -gGGUCGCuGCuGCGACGgcUGGUgcccCCCGCc -3'
miRNA:   3'- gaCCGGCG-CGuCGCUGU--ACCA----GGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.