miRNA display CGI


Results 1 - 20 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14613 5' -60.8 NC_003521.1 + 60690 0.72 0.492309
Target:  5'- -cGGCCGCGCgggggacccgggGGCGGCGcgGGUCgcaccacgCCGCu -3'
miRNA:   3'- gaCCGGCGCG------------UCGCUGUa-CCAG--------GGCG- -5'
14613 5' -60.8 NC_003521.1 + 89261 0.73 0.439852
Target:  5'- -cGcGCCGCGUcccgcgaaaauAGCGugAUGGUacaaCCCGCg -3'
miRNA:   3'- gaC-CGGCGCG-----------UCGCugUACCA----GGGCG- -5'
14613 5' -60.8 NC_003521.1 + 166274 0.73 0.439852
Target:  5'- -gGGCaCGCGCAcggcGCGGC-UGGUCCgCGUg -3'
miRNA:   3'- gaCCG-GCGCGU----CGCUGuACCAGG-GCG- -5'
14613 5' -60.8 NC_003521.1 + 42613 0.73 0.439852
Target:  5'- -cGGCCGC-CGGCGGCGccGUCgCCGCc -3'
miRNA:   3'- gaCCGGCGcGUCGCUGUacCAG-GGCG- -5'
14613 5' -60.8 NC_003521.1 + 122082 0.72 0.465697
Target:  5'- aUGcCCGUcuGCAGCGACuUGGUCUCGUg -3'
miRNA:   3'- gACcGGCG--CGUCGCUGuACCAGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 53502 0.72 0.474487
Target:  5'- -aGGCCGCugcugcggcgucGCAGCGGCcgAUGGUgcugUCCGCu -3'
miRNA:   3'- gaCCGGCG------------CGUCGCUG--UACCA----GGGCG- -5'
14613 5' -60.8 NC_003521.1 + 74573 0.72 0.483359
Target:  5'- -gGGCgGCgacggaGCGGCGGCGcgGcGUCCCGCg -3'
miRNA:   3'- gaCCGgCG------CGUCGCUGUa-C-CAGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 126781 0.72 0.492309
Target:  5'- -aGGCCcugGCGCuGCG-CGUGGUCCaGCu -3'
miRNA:   3'- gaCCGG---CGCGuCGCuGUACCAGGgCG- -5'
14613 5' -60.8 NC_003521.1 + 239650 0.72 0.492309
Target:  5'- -aGGCCGUccagucccguagGCGGCGcCGUGGcUCCCGg -3'
miRNA:   3'- gaCCGGCG------------CGUCGCuGUACC-AGGGCg -5'
14613 5' -60.8 NC_003521.1 + 239250 0.73 0.423083
Target:  5'- -cGGCCGUcaGCAGCGACGgcgGGUgUgGCg -3'
miRNA:   3'- gaCCGGCG--CGUCGCUGUa--CCAgGgCG- -5'
14613 5' -60.8 NC_003521.1 + 204039 0.73 0.423083
Target:  5'- -cGGCUcCGCAGCG-CGUGGcCCUGCc -3'
miRNA:   3'- gaCCGGcGCGUCGCuGUACCaGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 145587 0.73 0.423083
Target:  5'- -cGGCaCGaCGCGGCGGcCGUGGcCUCGCu -3'
miRNA:   3'- gaCCG-GC-GCGUCGCU-GUACCaGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 114769 0.76 0.303837
Target:  5'- -gGGuuGCGUAGCGugGUGGagCCCGg -3'
miRNA:   3'- gaCCggCGCGUCGCugUACCa-GGGCg -5'
14613 5' -60.8 NC_003521.1 + 239801 0.75 0.338137
Target:  5'- uCUGGCUGCGCGGCGugAUG--CgCGCg -3'
miRNA:   3'- -GACCGGCGCGUCGCugUACcaGgGCG- -5'
14613 5' -60.8 NC_003521.1 + 99626 0.75 0.345326
Target:  5'- -cGGCgGCGCAGCGcCAcGGccaCCCGCg -3'
miRNA:   3'- gaCCGgCGCGUCGCuGUaCCa--GGGCG- -5'
14613 5' -60.8 NC_003521.1 + 217097 0.74 0.363024
Target:  5'- -cGGCCGCcCAGCGACAUGGguuggacguagaugCCCa- -3'
miRNA:   3'- gaCCGGCGcGUCGCUGUACCa-------------GGGcg -5'
14613 5' -60.8 NC_003521.1 + 111815 0.74 0.390728
Target:  5'- uCUGGCgGCGcCAGCGagaucuggaGCGUGGUgCCCaGCa -3'
miRNA:   3'- -GACCGgCGC-GUCGC---------UGUACCA-GGG-CG- -5'
14613 5' -60.8 NC_003521.1 + 131329 0.74 0.390728
Target:  5'- cCUGGCCGUGCAGCG-CuucGcCCCGUg -3'
miRNA:   3'- -GACCGGCGCGUCGCuGuacCaGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 198250 0.73 0.414844
Target:  5'- gCUGGCUGacgcCGCAGCGAUAgccGUCCCaGCg -3'
miRNA:   3'- -GACCGGC----GCGUCGCUGUac-CAGGG-CG- -5'
14613 5' -60.8 NC_003521.1 + 66336 0.73 0.423083
Target:  5'- -aGGCCGCcugGCAGCaAC-UGGaUCCCGCu -3'
miRNA:   3'- gaCCGGCG---CGUCGcUGuACC-AGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.