miRNA display CGI


Results 1 - 20 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14613 5' -60.8 NC_003521.1 + 98536 0.84 0.091162
Target:  5'- -gGGCCGCuGCAGCGGCGgcgGGUCCCaGCc -3'
miRNA:   3'- gaCCGGCG-CGUCGCUGUa--CCAGGG-CG- -5'
14613 5' -60.8 NC_003521.1 + 18302 0.71 0.507697
Target:  5'- cCUGGCCuauggacccuucguGCcCAGCGGCGUGGUgCUGUu -3'
miRNA:   3'- -GACCGG--------------CGcGUCGCUGUACCAgGGCG- -5'
14613 5' -60.8 NC_003521.1 + 115702 0.71 0.5196
Target:  5'- aCUGGCCaaGCugacGGCGGcCGUGGugcccaUCCCGCa -3'
miRNA:   3'- -GACCGGcgCG----UCGCU-GUACC------AGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 28385 0.66 0.831664
Target:  5'- gUGGCaCGUGUcGCGACGccuggccaucaUGGgCCUGCu -3'
miRNA:   3'- gACCG-GCGCGuCGCUGU-----------ACCaGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 106844 0.76 0.284574
Target:  5'- uUGGCCGCGgcCAGCGuccgcGCAUGGacgCCCGUa -3'
miRNA:   3'- gACCGGCGC--GUCGC-----UGUACCa--GGGCG- -5'
14613 5' -60.8 NC_003521.1 + 180103 0.76 0.290886
Target:  5'- -aGGgaGgGCAGCGGCGUGGUgcgaCCCGCg -3'
miRNA:   3'- gaCCggCgCGUCGCUGUACCA----GGGCG- -5'
14613 5' -60.8 NC_003521.1 + 6629 0.75 0.310478
Target:  5'- -aGGCCGCGC-GCGAacgcuUGG-CCCGCu -3'
miRNA:   3'- gaCCGGCGCGuCGCUgu---ACCaGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 39574 0.75 0.338137
Target:  5'- uCUGGCUGCGCGGCGugAUG--CgCGCg -3'
miRNA:   3'- -GACCGGCGCGUCGCugUACcaGgGCG- -5'
14613 5' -60.8 NC_003521.1 + 206361 0.74 0.398664
Target:  5'- gCUGGCC-UGCGGCGACGacccccaGG-CCCGCa -3'
miRNA:   3'- -GACCGGcGCGUCGCUGUa------CCaGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 39423 0.72 0.492309
Target:  5'- -aGGCCGUccagucccguagGCGGCGcCGUGGcUCCCGg -3'
miRNA:   3'- gaCCGGCG------------CGUCGCuGUACC-AGGGCg -5'
14613 5' -60.8 NC_003521.1 + 129668 0.73 0.423083
Target:  5'- -cGGCCGCGCuauGCGGacc-GUCCCGUg -3'
miRNA:   3'- gaCCGGCGCGu--CGCUguacCAGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 91332 0.74 0.367545
Target:  5'- --aGUCGCGCAGCGGCGUcuGUCCgGCg -3'
miRNA:   3'- gacCGGCGCGUCGCUGUAc-CAGGgCG- -5'
14613 5' -60.8 NC_003521.1 + 127670 0.78 0.212163
Target:  5'- uUGGCCGCGagcaGGCGGCG-GGUCCagaGCg -3'
miRNA:   3'- gACCGGCGCg---UCGCUGUaCCAGGg--CG- -5'
14613 5' -60.8 NC_003521.1 + 5334 0.73 0.43142
Target:  5'- -cGGCCGCGacucCGGCGAUAgUGGUaagCCCGUg -3'
miRNA:   3'- gaCCGGCGC----GUCGCUGU-ACCA---GGGCG- -5'
14613 5' -60.8 NC_003521.1 + 204892 0.77 0.248964
Target:  5'- uUGGCCGCGCGGCGGgAcGGUggCCGCc -3'
miRNA:   3'- gACCGGCGCGUCGCUgUaCCAg-GGCG- -5'
14613 5' -60.8 NC_003521.1 + 175115 0.74 0.36528
Target:  5'- -gGGCCGcCGCGGCGcCGcuguccuucuugccUGGUCCCGg -3'
miRNA:   3'- gaCCGGC-GCGUCGCuGU--------------ACCAGGGCg -5'
14613 5' -60.8 NC_003521.1 + 22413 0.73 0.448378
Target:  5'- gCUGGCCaUGCugcGCGGCGUGGccgaguaccgCCCGCg -3'
miRNA:   3'- -GACCGGcGCGu--CGCUGUACCa---------GGGCG- -5'
14613 5' -60.8 NC_003521.1 + 114040 0.71 0.510433
Target:  5'- gCUGGaccaCGCGCAGCGcCAgGG-CCUGCc -3'
miRNA:   3'- -GACCg---GCGCGUCGCuGUaCCaGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 166175 0.77 0.254633
Target:  5'- -gGGCCGaGCGGCGcucCAgGGUCCCGCg -3'
miRNA:   3'- gaCCGGCgCGUCGCu--GUaCCAGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 13927 0.76 0.290886
Target:  5'- -aGGCCGCGCuGGcCGcCGUGGUgccCCCGCa -3'
miRNA:   3'- gaCCGGCGCG-UC-GCuGUACCA---GGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.