miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 5' -54.7 NC_003521.1 + 77845 0.68 0.93538
Target:  5'- --gGGCCaccCGUGCCCACCACu--- -3'
miRNA:   3'- ucaUCGGguaGUACGGGUGGUGcaug -5'
14615 5' -54.7 NC_003521.1 + 138047 0.68 0.921917
Target:  5'- --cGGCgCCGUCAUcgcgcagccgcugccGCuCUACCGCGUGCa -3'
miRNA:   3'- ucaUCG-GGUAGUA---------------CG-GGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 136694 0.7 0.860328
Target:  5'- --cAGCuCCAUCGUGUCC-CCACG-GCg -3'
miRNA:   3'- ucaUCG-GGUAGUACGGGuGGUGCaUG- -5'
14615 5' -54.7 NC_003521.1 + 31221 0.71 0.820086
Target:  5'- cAGuUAGCCUGUUGUGUuuaccuCCGCUACGUGCg -3'
miRNA:   3'- -UC-AUCGGGUAGUACG------GGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 119154 0.67 0.960495
Target:  5'- aAGgAGCCCGaCGUGUacuaCACCACGUc- -3'
miRNA:   3'- -UCaUCGGGUaGUACGg---GUGGUGCAug -5'
14615 5' -54.7 NC_003521.1 + 36730 0.67 0.944663
Target:  5'- cAGUGGCgCCAcCAggugcacgugGCCCACgACGUGu -3'
miRNA:   3'- -UCAUCG-GGUaGUa---------CGGGUGgUGCAUg -5'
14615 5' -54.7 NC_003521.1 + 49872 0.69 0.910485
Target:  5'- aAGU-GCCCAUCAuccgUcgucuccccuacgucGCCCGCUACGUAa -3'
miRNA:   3'- -UCAuCGGGUAGU----A---------------CGGGUGGUGCAUg -5'
14615 5' -54.7 NC_003521.1 + 134371 0.71 0.811507
Target:  5'- aAGUcGCUCAaCAUGCgCUACUGCGUGCg -3'
miRNA:   3'- -UCAuCGGGUaGUACG-GGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 29100 0.67 0.944663
Target:  5'- uGgcGUCCAgugCGUGaUCCGCCACGgcgGCa -3'
miRNA:   3'- uCauCGGGUa--GUAC-GGGUGGUGCa--UG- -5'
14615 5' -54.7 NC_003521.1 + 43341 0.71 0.802767
Target:  5'- ---cGCgCCGUCcgGCCCGCCGCGc-- -3'
miRNA:   3'- ucauCG-GGUAGuaCGGGUGGUGCaug -5'
14615 5' -54.7 NC_003521.1 + 205778 0.68 0.914012
Target:  5'- uGGUGGCgCCGcacggcaugagCGUGCCCaACCGCGUcCg -3'
miRNA:   3'- -UCAUCG-GGUa----------GUACGGG-UGGUGCAuG- -5'
14615 5' -54.7 NC_003521.1 + 173255 0.68 0.93538
Target:  5'- -cUGGCCCG-CGggGCCCGCCGCcugACa -3'
miRNA:   3'- ucAUCGGGUaGUa-CGGGUGGUGca-UG- -5'
14615 5' -54.7 NC_003521.1 + 203366 0.69 0.901931
Target:  5'- cGGUGGCCCGcgcgCGaGCCCACaGCGUcACc -3'
miRNA:   3'- -UCAUCGGGUa---GUaCGGGUGgUGCA-UG- -5'
14615 5' -54.7 NC_003521.1 + 138805 0.7 0.860328
Target:  5'- cGUGGCCCAg-GUGCUCaACCACGc-- -3'
miRNA:   3'- uCAUCGGGUagUACGGG-UGGUGCaug -5'
14615 5' -54.7 NC_003521.1 + 111598 0.7 0.836736
Target:  5'- cGUGGCCag-CGgcgccggacUGCCCACCACGcGCc -3'
miRNA:   3'- uCAUCGGguaGU---------ACGGGUGGUGCaUG- -5'
14615 5' -54.7 NC_003521.1 + 198098 0.71 0.823472
Target:  5'- cGGU-GCCCuuguacgcuuuggaaAUCGUGCCgGCCACGUugucGCg -3'
miRNA:   3'- -UCAuCGGG---------------UAGUACGGgUGGUGCA----UG- -5'
14615 5' -54.7 NC_003521.1 + 152743 0.66 0.967099
Target:  5'- gAGUGGCCCGUgGUcacgggcgccGCcgaCCACCGCG-ACc -3'
miRNA:   3'- -UCAUCGGGUAgUA----------CG---GGUGGUGCaUG- -5'
14615 5' -54.7 NC_003521.1 + 15749 0.66 0.963903
Target:  5'- aGGUGcGCCCGggcagcagCAUGCCCgaGCUACGcgACc -3'
miRNA:   3'- -UCAU-CGGGUa-------GUACGGG--UGGUGCa-UG- -5'
14615 5' -54.7 NC_003521.1 + 18310 0.67 0.953027
Target:  5'- -aUGGaCCCuUCGUGCCCAgCgGCGUGg -3'
miRNA:   3'- ucAUC-GGGuAGUACGGGU-GgUGCAUg -5'
14615 5' -54.7 NC_003521.1 + 132715 0.67 0.948959
Target:  5'- cGUAGCCCc-CAUGCCCAagucCCcaaGCGcUACa -3'
miRNA:   3'- uCAUCGGGuaGUACGGGU----GG---UGC-AUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.