miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 3' -53.1 NC_003521.1 + 222936 1.07 0.012024
Target:  5'- uCGUAGACGUAGACGGUGCCGUGCUUAc -3'
miRNA:   3'- -GCAUCUGCAUCUGCCACGGCACGAAU- -5'
14617 3' -53.1 NC_003521.1 + 34704 0.83 0.338794
Target:  5'- uCGUAGGCGaAGACGGcGCCGUGCg-- -3'
miRNA:   3'- -GCAUCUGCaUCUGCCaCGGCACGaau -5'
14617 3' -53.1 NC_003521.1 + 225854 0.71 0.885414
Target:  5'- uCGUGGugGUgcGGGCacaGGUGCCgGUGCUc- -3'
miRNA:   3'- -GCAUCugCA--UCUG---CCACGG-CACGAau -5'
14617 3' -53.1 NC_003521.1 + 34213 0.7 0.911012
Target:  5'- gGgcGGCGUAGACGGcGCCcGUGUc-- -3'
miRNA:   3'- gCauCUGCAUCUGCCaCGG-CACGaau -5'
14617 3' -53.1 NC_003521.1 + 102859 0.7 0.937787
Target:  5'- cCGUGG-CGUAGGucUGG-GCCGUGCg-- -3'
miRNA:   3'- -GCAUCuGCAUCU--GCCaCGGCACGaau -5'
14617 3' -53.1 NC_003521.1 + 93064 0.69 0.942438
Target:  5'- cCGUGGugGUGGccAUGG-GCCuGUGCUa- -3'
miRNA:   3'- -GCAUCugCAUC--UGCCaCGG-CACGAau -5'
14617 3' -53.1 NC_003521.1 + 177807 0.69 0.951046
Target:  5'- gGUGGGCGUcGugGGcGCCGccgGCUUc -3'
miRNA:   3'- gCAUCUGCAuCugCCaCGGCa--CGAAu -5'
14617 3' -53.1 NC_003521.1 + 109932 0.69 0.951046
Target:  5'- ---cGACGagAGACGGUGCCGacGCUg- -3'
miRNA:   3'- gcauCUGCa-UCUGCCACGGCa-CGAau -5'
14617 3' -53.1 NC_003521.1 + 100508 0.69 0.958748
Target:  5'- cCGcGGGCGUcGGACGGUGCaCGgugGCg-- -3'
miRNA:   3'- -GCaUCUGCA-UCUGCCACG-GCa--CGaau -5'
14617 3' -53.1 NC_003521.1 + 210430 0.68 0.962269
Target:  5'- gCGUGGGCGgcGACGGcagcguaCUGUGCUa- -3'
miRNA:   3'- -GCAUCUGCauCUGCCac-----GGCACGAau -5'
14617 3' -53.1 NC_003521.1 + 211871 0.68 0.962269
Target:  5'- gGUAGAgGUAGAgGGcGCCGcGCg-- -3'
miRNA:   3'- gCAUCUgCAUCUgCCaCGGCaCGaau -5'
14617 3' -53.1 NC_003521.1 + 63873 0.68 0.965575
Target:  5'- gGUGGACG-AGGCGGcgcGCCGggaGCUg- -3'
miRNA:   3'- gCAUCUGCaUCUGCCa--CGGCa--CGAau -5'
14617 3' -53.1 NC_003521.1 + 17849 0.68 0.965575
Target:  5'- aGUGGGCGcAGGaGGUGCCcugcGUGCUg- -3'
miRNA:   3'- gCAUCUGCaUCUgCCACGG----CACGAau -5'
14617 3' -53.1 NC_003521.1 + 90969 0.68 0.968671
Target:  5'- uGUGGGCGggaggAGGCGGcgaacGCCGaUGCUg- -3'
miRNA:   3'- gCAUCUGCa----UCUGCCa----CGGC-ACGAau -5'
14617 3' -53.1 NC_003521.1 + 199656 0.68 0.968671
Target:  5'- aGUAGAgguuggucaUGUAGAUGGUgggcgucgaguaGCCGUGCa-- -3'
miRNA:   3'- gCAUCU---------GCAUCUGCCA------------CGGCACGaau -5'
14617 3' -53.1 NC_003521.1 + 178362 0.68 0.968671
Target:  5'- ----cAUGUAGACGG-GCCGcUGCUUGg -3'
miRNA:   3'- gcaucUGCAUCUGCCaCGGC-ACGAAU- -5'
14617 3' -53.1 NC_003521.1 + 214424 0.68 0.968671
Target:  5'- --gAGACGgcGugGGUGaCgGUGCUg- -3'
miRNA:   3'- gcaUCUGCauCugCCAC-GgCACGAau -5'
14617 3' -53.1 NC_003521.1 + 213962 0.68 0.968671
Target:  5'- gGUGGGCGccGGcuCGG-GCCGUGCUa- -3'
miRNA:   3'- gCAUCUGCa-UCu-GCCaCGGCACGAau -5'
14617 3' -53.1 NC_003521.1 + 134794 0.68 0.971565
Target:  5'- aGUAGuCGUAGGCguuGGUGUugagCGUGCUg- -3'
miRNA:   3'- gCAUCuGCAUCUG---CCACG----GCACGAau -5'
14617 3' -53.1 NC_003521.1 + 69495 0.68 0.971565
Target:  5'- gGUGGuCGUAGACGGcgcagGCCGcGUUg- -3'
miRNA:   3'- gCAUCuGCAUCUGCCa----CGGCaCGAau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.