Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14617 | 3' | -53.1 | NC_003521.1 | + | 17849 | 0.68 | 0.965575 |
Target: 5'- aGUGGGCGcAGGaGGUGCCcugcGUGCUg- -3' miRNA: 3'- gCAUCUGCaUCUgCCACGG----CACGAau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 34213 | 0.7 | 0.911012 |
Target: 5'- gGgcGGCGUAGACGGcGCCcGUGUc-- -3' miRNA: 3'- gCauCUGCAUCUGCCaCGG-CACGaau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 34704 | 0.83 | 0.338794 |
Target: 5'- uCGUAGGCGaAGACGGcGCCGUGCg-- -3' miRNA: 3'- -GCAUCUGCaUCUGCCaCGGCACGaau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 39426 | 0.66 | 0.989578 |
Target: 5'- cCGUccAGuccCGUAGGCGGcGCCGUGgCUc- -3' miRNA: 3'- -GCA--UCu--GCAUCUGCCaCGGCAC-GAau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 43139 | 0.66 | 0.988199 |
Target: 5'- gCGcUGGGCGUGGA-GGUGCaCGcGCUg- -3' miRNA: 3'- -GC-AUCUGCAUCUgCCACG-GCaCGAau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 63873 | 0.68 | 0.965575 |
Target: 5'- gGUGGACG-AGGCGGcgcGCCGggaGCUg- -3' miRNA: 3'- gCAUCUGCaUCUGCCa--CGGCa--CGAau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 68115 | 0.67 | 0.979087 |
Target: 5'- --aAGACGUGGACGGagacGCCGUacgagcaguGCUg- -3' miRNA: 3'- gcaUCUGCAUCUGCCa---CGGCA---------CGAau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 69495 | 0.68 | 0.971565 |
Target: 5'- gGUGGuCGUAGACGGcgcagGCCGcGUUg- -3' miRNA: 3'- gCAUCuGCAUCUGCCa----CGGCaCGAau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 72541 | 0.67 | 0.981232 |
Target: 5'- aGgcGGCGgcGACGGUGUCGUcGUc-- -3' miRNA: 3'- gCauCUGCauCUGCCACGGCA-CGaau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 74404 | 0.66 | 0.991955 |
Target: 5'- aCGU--GCGUGGACGaccuGUGCCGcgGCUa- -3' miRNA: 3'- -GCAucUGCAUCUGC----CACGGCa-CGAau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 75904 | 0.67 | 0.976766 |
Target: 5'- uGUcGGCGUGGAUGGgcacGuuGUGCUc- -3' miRNA: 3'- gCAuCUGCAUCUGCCa---CggCACGAau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 84913 | 0.66 | 0.991955 |
Target: 5'- aGUAGGCGUAGcCGGccUGCucgcagggCGUGCg-- -3' miRNA: 3'- gCAUCUGCAUCuGCC--ACG--------GCACGaau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 90969 | 0.68 | 0.968671 |
Target: 5'- uGUGGGCGggaggAGGCGGcgaacGCCGaUGCUg- -3' miRNA: 3'- gCAUCUGCa----UCUGCCa----CGGC-ACGAau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 93064 | 0.69 | 0.942438 |
Target: 5'- cCGUGGugGUGGccAUGG-GCCuGUGCUa- -3' miRNA: 3'- -GCAUCugCAUC--UGCCaCGG-CACGAau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 100508 | 0.69 | 0.958748 |
Target: 5'- cCGcGGGCGUcGGACGGUGCaCGgugGCg-- -3' miRNA: 3'- -GCaUCUGCA-UCUGCCACG-GCa--CGaau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 102859 | 0.7 | 0.937787 |
Target: 5'- cCGUGG-CGUAGGucUGG-GCCGUGCg-- -3' miRNA: 3'- -GCAUCuGCAUCU--GCCaCGGCACGaau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 106288 | 0.67 | 0.980817 |
Target: 5'- cCGUGGAgGgcaacagcaaccAGGCGGcgGCCGUGCg-- -3' miRNA: 3'- -GCAUCUgCa-----------UCUGCCa-CGGCACGaau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 109932 | 0.69 | 0.951046 |
Target: 5'- ---cGACGagAGACGGUGCCGacGCUg- -3' miRNA: 3'- gcauCUGCa-UCUGCCACGGCa-CGAau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 120687 | 0.66 | 0.992971 |
Target: 5'- cCGUGGAgGUGagccgcaccuCGGUGCUGUGCc-- -3' miRNA: 3'- -GCAUCUgCAUcu--------GCCACGGCACGaau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 128266 | 0.66 | 0.989312 |
Target: 5'- cCGUGGugGgcagcgcguugcGGAUGGUGUCGgucaGCUUGa -3' miRNA: 3'- -GCAUCugCa-----------UCUGCCACGGCa---CGAAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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