miRNA display CGI


Results 21 - 40 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 3' -53.1 NC_003521.1 + 128835 0.67 0.986683
Target:  5'- uCGUAGACGgcGAUGGguagcUGCCagaauGUGCg-- -3'
miRNA:   3'- -GCAUCUGCauCUGCC-----ACGG-----CACGaau -5'
14617 3' -53.1 NC_003521.1 + 134794 0.68 0.971565
Target:  5'- aGUAGuCGUAGGCguuGGUGUugagCGUGCUg- -3'
miRNA:   3'- gCAUCuGCAUCUG---CCACG----GCACGAau -5'
14617 3' -53.1 NC_003521.1 + 147063 0.66 0.992971
Target:  5'- ---cGACGUGGugGGagaGCCGgGCUUc -3'
miRNA:   3'- gcauCUGCAUCugCCa--CGGCaCGAAu -5'
14617 3' -53.1 NC_003521.1 + 155244 0.67 0.983208
Target:  5'- cCGUGGugGUGGugGGggGCgGcgGCg-- -3'
miRNA:   3'- -GCAUCugCAUCugCCa-CGgCa-CGaau -5'
14617 3' -53.1 NC_003521.1 + 169647 0.67 0.985022
Target:  5'- uGUGGuCGUAGA-GGUGCCGUuCa-- -3'
miRNA:   3'- gCAUCuGCAUCUgCCACGGCAcGaau -5'
14617 3' -53.1 NC_003521.1 + 171297 0.67 0.986683
Target:  5'- gCGUGGGCuggaAGGCGGUGCUGgGCc-- -3'
miRNA:   3'- -GCAUCUGca--UCUGCCACGGCaCGaau -5'
14617 3' -53.1 NC_003521.1 + 177807 0.69 0.951046
Target:  5'- gGUGGGCGUcGugGGcGCCGccgGCUUc -3'
miRNA:   3'- gCAUCUGCAuCugCCaCGGCa--CGAAu -5'
14617 3' -53.1 NC_003521.1 + 178253 0.66 0.990092
Target:  5'- gGUAGGCGgcGGCGuugcugcauugcgacGUGCgGUGCg-- -3'
miRNA:   3'- gCAUCUGCauCUGC---------------CACGgCACGaau -5'
14617 3' -53.1 NC_003521.1 + 178362 0.68 0.968671
Target:  5'- ----cAUGUAGACGG-GCCGcUGCUUGg -3'
miRNA:   3'- gcaucUGCAUCUGCCaCGGC-ACGAAU- -5'
14617 3' -53.1 NC_003521.1 + 184004 0.66 0.990708
Target:  5'- gCGUGGugGguUAGACguucccaccccgaGGUGCCGUcGCg-- -3'
miRNA:   3'- -GCAUCugC--AUCUG-------------CCACGGCA-CGaau -5'
14617 3' -53.1 NC_003521.1 + 185232 0.67 0.983208
Target:  5'- uGUAcGACGaggAGACGGUGUgGUcGCUg- -3'
miRNA:   3'- gCAU-CUGCa--UCUGCCACGgCA-CGAau -5'
14617 3' -53.1 NC_003521.1 + 196810 0.66 0.989578
Target:  5'- gGUGGGCGaGGGCaG-GCCGUGgUUGa -3'
miRNA:   3'- gCAUCUGCaUCUGcCaCGGCACgAAU- -5'
14617 3' -53.1 NC_003521.1 + 199003 0.67 0.983018
Target:  5'- cCGUAucucccuGACGUAGACGGUGUauguUGCa-- -3'
miRNA:   3'- -GCAU-------CUGCAUCUGCCACGgc--ACGaau -5'
14617 3' -53.1 NC_003521.1 + 199656 0.68 0.968671
Target:  5'- aGUAGAgguuggucaUGUAGAUGGUgggcgucgaguaGCCGUGCa-- -3'
miRNA:   3'- gCAUCU---------GCAUCUGCCA------------CGGCACGaau -5'
14617 3' -53.1 NC_003521.1 + 210430 0.68 0.962269
Target:  5'- gCGUGGGCGgcGACGGcagcguaCUGUGCUa- -3'
miRNA:   3'- -GCAUCUGCauCUGCCac-----GGCACGAau -5'
14617 3' -53.1 NC_003521.1 + 211871 0.68 0.962269
Target:  5'- gGUAGAgGUAGAgGGcGCCGcGCg-- -3'
miRNA:   3'- gCAUCUgCAUCUgCCaCGGCaCGaau -5'
14617 3' -53.1 NC_003521.1 + 213962 0.68 0.968671
Target:  5'- gGUGGGCGccGGcuCGG-GCCGUGCUa- -3'
miRNA:   3'- gCAUCUGCa-UCu-GCCaCGGCACGAau -5'
14617 3' -53.1 NC_003521.1 + 214424 0.68 0.968671
Target:  5'- --gAGACGgcGugGGUGaCgGUGCUg- -3'
miRNA:   3'- gcaUCUGCauCugCCAC-GgCACGAau -5'
14617 3' -53.1 NC_003521.1 + 222936 1.07 0.012024
Target:  5'- uCGUAGACGUAGACGGUGCCGUGCUUAc -3'
miRNA:   3'- -GCAUCUGCAUCUGCCACGGCACGAAU- -5'
14617 3' -53.1 NC_003521.1 + 225854 0.71 0.885414
Target:  5'- uCGUGGugGUgcGGGCacaGGUGCCgGUGCUc- -3'
miRNA:   3'- -GCAUCugCA--UCUG---CCACGG-CACGAau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.