miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 3' -53.1 NC_003521.1 + 185232 0.67 0.983208
Target:  5'- uGUAcGACGaggAGACGGUGUgGUcGCUg- -3'
miRNA:   3'- gCAU-CUGCa--UCUGCCACGgCA-CGAau -5'
14617 3' -53.1 NC_003521.1 + 228237 0.67 0.983208
Target:  5'- aCGcUGGuCGUGGugGGUGCCGccGUg-- -3'
miRNA:   3'- -GC-AUCuGCAUCugCCACGGCa-CGaau -5'
14617 3' -53.1 NC_003521.1 + 128835 0.67 0.986683
Target:  5'- uCGUAGACGgcGAUGGguagcUGCCagaauGUGCg-- -3'
miRNA:   3'- -GCAUCUGCauCUGCC-----ACGG-----CACGaau -5'
14617 3' -53.1 NC_003521.1 + 171297 0.67 0.986683
Target:  5'- gCGUGGGCuggaAGGCGGUGCUGgGCc-- -3'
miRNA:   3'- -GCAUCUGca--UCUGCCACGGCaCGaau -5'
14617 3' -53.1 NC_003521.1 + 229470 0.67 0.987307
Target:  5'- gCGUGGGCGgguuacgugauUAGACGGUGUggaagcgacgucgaaCGUGCc-- -3'
miRNA:   3'- -GCAUCUGC-----------AUCUGCCACG---------------GCACGaau -5'
14617 3' -53.1 NC_003521.1 + 39426 0.66 0.989578
Target:  5'- cCGUccAGuccCGUAGGCGGcGCCGUGgCUc- -3'
miRNA:   3'- -GCA--UCu--GCAUCUGCCaCGGCAC-GAau -5'
14617 3' -53.1 NC_003521.1 + 196810 0.66 0.989578
Target:  5'- gGUGGGCGaGGGCaG-GCCGUGgUUGa -3'
miRNA:   3'- gCAUCUGCaUCUGcCaCGGCACgAAU- -5'
14617 3' -53.1 NC_003521.1 + 178253 0.66 0.990092
Target:  5'- gGUAGGCGgcGGCGuugcugcauugcgacGUGCgGUGCg-- -3'
miRNA:   3'- gCAUCUGCauCUGC---------------CACGgCACGaau -5'
14617 3' -53.1 NC_003521.1 + 84913 0.66 0.991955
Target:  5'- aGUAGGCGUAGcCGGccUGCucgcagggCGUGCg-- -3'
miRNA:   3'- gCAUCUGCAUCuGCC--ACG--------GCACGaau -5'
14617 3' -53.1 NC_003521.1 + 155244 0.67 0.983208
Target:  5'- cCGUGGugGUGGugGGggGCgGcgGCg-- -3'
miRNA:   3'- -GCAUCugCAUCugCCa-CGgCa-CGaau -5'
14617 3' -53.1 NC_003521.1 + 106288 0.67 0.980817
Target:  5'- cCGUGGAgGgcaacagcaaccAGGCGGcgGCCGUGCg-- -3'
miRNA:   3'- -GCAUCUgCa-----------UCUGCCa-CGGCACGaau -5'
14617 3' -53.1 NC_003521.1 + 239821 0.67 0.976766
Target:  5'- uGUuGACGccAGAUGGccaUGCCGUGCUc- -3'
miRNA:   3'- gCAuCUGCa-UCUGCC---ACGGCACGAau -5'
14617 3' -53.1 NC_003521.1 + 177807 0.69 0.951046
Target:  5'- gGUGGGCGUcGugGGcGCCGccgGCUUc -3'
miRNA:   3'- gCAUCUGCAuCugCCaCGGCa--CGAAu -5'
14617 3' -53.1 NC_003521.1 + 109932 0.69 0.951046
Target:  5'- ---cGACGagAGACGGUGCCGacGCUg- -3'
miRNA:   3'- gcauCUGCa-UCUGCCACGGCa-CGAau -5'
14617 3' -53.1 NC_003521.1 + 210430 0.68 0.962269
Target:  5'- gCGUGGGCGgcGACGGcagcguaCUGUGCUa- -3'
miRNA:   3'- -GCAUCUGCauCUGCCac-----GGCACGAau -5'
14617 3' -53.1 NC_003521.1 + 211871 0.68 0.962269
Target:  5'- gGUAGAgGUAGAgGGcGCCGcGCg-- -3'
miRNA:   3'- gCAUCUgCAUCUgCCaCGGCaCGaau -5'
14617 3' -53.1 NC_003521.1 + 17849 0.68 0.965575
Target:  5'- aGUGGGCGcAGGaGGUGCCcugcGUGCUg- -3'
miRNA:   3'- gCAUCUGCaUCUgCCACGG----CACGAau -5'
14617 3' -53.1 NC_003521.1 + 90969 0.68 0.968671
Target:  5'- uGUGGGCGggaggAGGCGGcgaacGCCGaUGCUg- -3'
miRNA:   3'- gCAUCUGCa----UCUGCCa----CGGC-ACGAau -5'
14617 3' -53.1 NC_003521.1 + 199656 0.68 0.968671
Target:  5'- aGUAGAgguuggucaUGUAGAUGGUgggcgucgaguaGCCGUGCa-- -3'
miRNA:   3'- gCAUCU---------GCAUCUGCCA------------CGGCACGaau -5'
14617 3' -53.1 NC_003521.1 + 178362 0.68 0.968671
Target:  5'- ----cAUGUAGACGG-GCCGcUGCUUGg -3'
miRNA:   3'- gcaucUGCAUCUGCCaCGGC-ACGAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.