Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14617 | 3' | -53.1 | NC_003521.1 | + | 222936 | 1.07 | 0.012024 |
Target: 5'- uCGUAGACGUAGACGGUGCCGUGCUUAc -3' miRNA: 3'- -GCAUCUGCAUCUGCCACGGCACGAAU- -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 68115 | 0.67 | 0.979087 |
Target: 5'- --aAGACGUGGACGGagacGCCGUacgagcaguGCUg- -3' miRNA: 3'- gcaUCUGCAUCUGCCa---CGGCA---------CGAau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 72541 | 0.67 | 0.981232 |
Target: 5'- aGgcGGCGgcGACGGUGUCGUcGUc-- -3' miRNA: 3'- gCauCUGCauCUGCCACGGCA-CGaau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 199003 | 0.67 | 0.983018 |
Target: 5'- cCGUAucucccuGACGUAGACGGUGUauguUGCa-- -3' miRNA: 3'- -GCAU-------CUGCAUCUGCCACGgc--ACGaau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 169647 | 0.67 | 0.985022 |
Target: 5'- uGUGGuCGUAGA-GGUGCCGUuCa-- -3' miRNA: 3'- gCAUCuGCAUCUgCCACGGCAcGaau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 43139 | 0.66 | 0.988199 |
Target: 5'- gCGcUGGGCGUGGA-GGUGCaCGcGCUg- -3' miRNA: 3'- -GC-AUCUGCAUCUgCCACG-GCaCGAau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 128266 | 0.66 | 0.989312 |
Target: 5'- cCGUGGugGgcagcgcguugcGGAUGGUGUCGgucaGCUUGa -3' miRNA: 3'- -GCAUCugCa-----------UCUGCCACGGCa---CGAAU- -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 239653 | 0.66 | 0.989578 |
Target: 5'- cCGUccAGuccCGUAGGCGGcGCCGUGgCUc- -3' miRNA: 3'- -GCA--UCu--GCAUCUGCCaCGGCAC-GAau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 184004 | 0.66 | 0.990708 |
Target: 5'- gCGUGGugGguUAGACguucccaccccgaGGUGCCGUcGCg-- -3' miRNA: 3'- -GCAUCugC--AUCUG-------------CCACGGCA-CGaau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 75904 | 0.67 | 0.976766 |
Target: 5'- uGUcGGCGUGGAUGGgcacGuuGUGCUc- -3' miRNA: 3'- gCAuCUGCAUCUGCCa---CggCACGAau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 69495 | 0.68 | 0.971565 |
Target: 5'- gGUGGuCGUAGACGGcgcagGCCGcGUUg- -3' miRNA: 3'- gCAUCuGCAUCUGCCa----CGGCaCGAau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 134794 | 0.68 | 0.971565 |
Target: 5'- aGUAGuCGUAGGCguuGGUGUugagCGUGCUg- -3' miRNA: 3'- gCAUCuGCAUCUG---CCACG----GCACGAau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 34704 | 0.83 | 0.338794 |
Target: 5'- uCGUAGGCGaAGACGGcGCCGUGCg-- -3' miRNA: 3'- -GCAUCUGCaUCUGCCaCGGCACGaau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 225854 | 0.71 | 0.885414 |
Target: 5'- uCGUGGugGUgcGGGCacaGGUGCCgGUGCUc- -3' miRNA: 3'- -GCAUCugCA--UCUG---CCACGG-CACGAau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 34213 | 0.7 | 0.911012 |
Target: 5'- gGgcGGCGUAGACGGcGCCcGUGUc-- -3' miRNA: 3'- gCauCUGCAUCUGCCaCGG-CACGaau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 102859 | 0.7 | 0.937787 |
Target: 5'- cCGUGG-CGUAGGucUGG-GCCGUGCg-- -3' miRNA: 3'- -GCAUCuGCAUCU--GCCaCGGCACGaau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 100508 | 0.69 | 0.958748 |
Target: 5'- cCGcGGGCGUcGGACGGUGCaCGgugGCg-- -3' miRNA: 3'- -GCaUCUGCA-UCUGCCACG-GCa--CGaau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 63873 | 0.68 | 0.965575 |
Target: 5'- gGUGGACG-AGGCGGcgcGCCGggaGCUg- -3' miRNA: 3'- gCAUCUGCaUCUGCCa--CGGCa--CGAau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 213962 | 0.68 | 0.968671 |
Target: 5'- gGUGGGCGccGGcuCGG-GCCGUGCUa- -3' miRNA: 3'- gCAUCUGCa-UCu-GCCaCGGCACGAau -5' |
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14617 | 3' | -53.1 | NC_003521.1 | + | 214424 | 0.68 | 0.968671 |
Target: 5'- --gAGACGgcGugGGUGaCgGUGCUg- -3' miRNA: 3'- gcaUCUGCauCugCCAC-GgCACGAau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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