miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14619 5' -62.2 NC_003521.1 + 172991 0.66 0.782451
Target:  5'- gCCUUCU-GGGUCgcgGGGCUcacuugaggggagcaGCCGCGa -3'
miRNA:   3'- aGGGAGAgCUCAGa--CCCGG---------------CGGCGCg -5'
14619 5' -62.2 NC_003521.1 + 212600 0.66 0.78756
Target:  5'- cUCCgUCagCGAGgggaagCUGGGCgGuuGCGa -3'
miRNA:   3'- -AGGgAGa-GCUCa-----GACCCGgCggCGCg -5'
14619 5' -62.2 NC_003521.1 + 53931 0.66 0.770371
Target:  5'- gUCCUcacgcaUCUgGAGacgcugagCUGGGCCgacgaGCCGUGCu -3'
miRNA:   3'- -AGGG------AGAgCUCa-------GACCCGG-----CGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 98510 0.66 0.7695
Target:  5'- aCCCagUUGcgacgacgcgcgcGG-CUGGGCCGCUGCaGCg -3'
miRNA:   3'- aGGGagAGC-------------UCaGACCCGGCGGCG-CG- -5'
14619 5' -62.2 NC_003521.1 + 30841 0.66 0.779022
Target:  5'- aCgCUggUGGccGUCUGGGCCGuCCGCGg -3'
miRNA:   3'- aGgGAgaGCU--CAGACCCGGC-GGCGCg -5'
14619 5' -62.2 NC_003521.1 + 12602 0.66 0.779022
Target:  5'- uUCCCUUcUGGGaUCgcuucgGGGCCGUggaaCGCGUg -3'
miRNA:   3'- -AGGGAGaGCUC-AGa-----CCCGGCG----GCGCG- -5'
14619 5' -62.2 NC_003521.1 + 221293 0.66 0.779022
Target:  5'- cCCCgaucCUCGGGUCcgaGGGCCaguagucCCGCGa -3'
miRNA:   3'- aGGGa---GAGCUCAGa--CCCGGc------GGCGCg -5'
14619 5' -62.2 NC_003521.1 + 7169 0.66 0.786712
Target:  5'- gCCCUCguaaUCGAG-CUccaguacGGcGCCGCCGCu- -3'
miRNA:   3'- aGGGAG----AGCUCaGA-------CC-CGGCGGCGcg -5'
14619 5' -62.2 NC_003521.1 + 137927 0.67 0.707265
Target:  5'- cUCCCUgUCGGGcgugCUGcGCCuCUGCGCc -3'
miRNA:   3'- -AGGGAgAGCUCa---GACcCGGcGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 26975 0.67 0.707265
Target:  5'- gCCCUgcagCGAGaCUGGGCCGaaCUGCuGCg -3'
miRNA:   3'- aGGGAga--GCUCaGACCCGGC--GGCG-CG- -5'
14619 5' -62.2 NC_003521.1 + 143168 0.67 0.725677
Target:  5'- aUCCCguggGGGUCggacccGGcGCCGCCGCGa -3'
miRNA:   3'- -AGGGagagCUCAGa-----CC-CGGCGGCGCg -5'
14619 5' -62.2 NC_003521.1 + 121874 0.67 0.734784
Target:  5'- aCUgUCUCGGGcgCUGGcccugacgggacGCCGCCGCcCa -3'
miRNA:   3'- aGGgAGAGCUCa-GACC------------CGGCGGCGcG- -5'
14619 5' -62.2 NC_003521.1 + 86998 0.67 0.714659
Target:  5'- aUCCgUCagagcguggaaaCGGGcgugCUGGGCaCGCUGCGCg -3'
miRNA:   3'- -AGGgAGa-----------GCUCa---GACCCG-GCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 136758 0.67 0.707265
Target:  5'- gCCCgCUCGAG-CUGcuGGCCuacCUGCGCg -3'
miRNA:   3'- aGGGaGAGCUCaGAC--CCGGc--GGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 35386 0.67 0.707265
Target:  5'- cCCCUCggCGAGgacgcGGGCCG-CGCGa -3'
miRNA:   3'- aGGGAGa-GCUCaga--CCCGGCgGCGCg -5'
14619 5' -62.2 NC_003521.1 + 116510 0.67 0.725677
Target:  5'- -gCCUCUUcuGcCUGGGUugcgucaccuCGCCGCGCu -3'
miRNA:   3'- agGGAGAGcuCaGACCCG----------GCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 13814 0.67 0.725677
Target:  5'- cCCCUC-CGuuUCcgGGGCCGUCGgaaaGCa -3'
miRNA:   3'- aGGGAGaGCucAGa-CCCGGCGGCg---CG- -5'
14619 5' -62.2 NC_003521.1 + 77955 0.68 0.660402
Target:  5'- gCCCUgcUGGGUCuUGGaGCCGgCCGCGg -3'
miRNA:   3'- aGGGAgaGCUCAG-ACC-CGGC-GGCGCg -5'
14619 5' -62.2 NC_003521.1 + 133477 0.68 0.660402
Target:  5'- gCCCgaggUCGAGgaucacCUGGcGCCGCUGCuGCg -3'
miRNA:   3'- aGGGag--AGCUCa-----GACC-CGGCGGCG-CG- -5'
14619 5' -62.2 NC_003521.1 + 196452 0.68 0.650944
Target:  5'- -aCCUCggccUCGGGcgUGGGCCGCagccccaGCGCg -3'
miRNA:   3'- agGGAG----AGCUCagACCCGGCGg------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.