miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14619 5' -62.2 NC_003521.1 + 86998 0.67 0.714659
Target:  5'- aUCCgUCagagcguggaaaCGGGcgugCUGGGCaCGCUGCGCg -3'
miRNA:   3'- -AGGgAGa-----------GCUCa---GACCCG-GCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 91996 0.7 0.538188
Target:  5'- -aCCUCggcCGAGggcagGcGGUCGCCGCGCa -3'
miRNA:   3'- agGGAGa--GCUCaga--C-CCGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 92179 0.7 0.523551
Target:  5'- aUCCCcgC-CGAGcUCgGGGCCguuuuucgccgcccgGCCGCGCg -3'
miRNA:   3'- -AGGGa-GaGCUC-AGaCCCGG---------------CGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 98510 0.66 0.7695
Target:  5'- aCCCagUUGcgacgacgcgcgcGG-CUGGGCCGCUGCaGCg -3'
miRNA:   3'- aGGGagAGC-------------UCaGACCCGGCGGCG-CG- -5'
14619 5' -62.2 NC_003521.1 + 102857 0.68 0.622517
Target:  5'- gCCCguggCGuaGGUCUGGGCCG-UGCGUa -3'
miRNA:   3'- aGGGaga-GC--UCAGACCCGGCgGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 103495 0.66 0.75276
Target:  5'- gCCCg--CGuGauaggugaacUCgGGGUCGCCGCGCa -3'
miRNA:   3'- aGGGagaGCuC----------AGaCCCGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 103880 0.69 0.575342
Target:  5'- gCCgaCagGGGgaUGGGCUGCCGCGCg -3'
miRNA:   3'- aGGgaGagCUCagACCCGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 104148 0.71 0.501892
Target:  5'- gCCCUgCUCGGuGcUCUGcGGCgGCgGCGCg -3'
miRNA:   3'- aGGGA-GAGCU-C-AGAC-CCGgCGgCGCG- -5'
14619 5' -62.2 NC_003521.1 + 111680 0.68 0.676433
Target:  5'- aUCCCcUUCGAG-CUGaGcGCCGCCugccugacguaccuGCGCg -3'
miRNA:   3'- -AGGGaGAGCUCaGAC-C-CGGCGG--------------CGCG- -5'
14619 5' -62.2 NC_003521.1 + 112760 0.66 0.75276
Target:  5'- gCUCUC-CGA-UCUGGaGCCGCCauGUGCc -3'
miRNA:   3'- aGGGAGaGCUcAGACC-CGGCGG--CGCG- -5'
14619 5' -62.2 NC_003521.1 + 114488 0.68 0.660402
Target:  5'- gCCUUCaUCuGGGUgCUGuccgucguGGCCGCCGUGCc -3'
miRNA:   3'- aGGGAG-AG-CUCA-GAC--------CCGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 114924 0.69 0.594146
Target:  5'- gUCCCUCgagCGGcugCUGGagaGCUGCuCGCGCa -3'
miRNA:   3'- -AGGGAGa--GCUca-GACC---CGGCG-GCGCG- -5'
14619 5' -62.2 NC_003521.1 + 116361 0.66 0.75276
Target:  5'- gCCCga-CGAGgccgagCUGcuGCUGCCGCGCg -3'
miRNA:   3'- aGGGagaGCUCa-----GACc-CGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 116510 0.67 0.725677
Target:  5'- -gCCUCUUcuGcCUGGGUugcgucaccuCGCCGCGCu -3'
miRNA:   3'- agGGAGAGcuCaGACCCG----------GCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 116748 0.66 0.75276
Target:  5'- gCCCUucaaacacguggCUUGuGcagCgUGGGCCGCCGcCGCg -3'
miRNA:   3'- aGGGA------------GAGCuCa--G-ACCCGGCGGC-GCG- -5'
14619 5' -62.2 NC_003521.1 + 118186 0.69 0.603587
Target:  5'- gCCCgC-CGgcaaAGUCgGGGCCGCCgaGCGCg -3'
miRNA:   3'- aGGGaGaGC----UCAGaCCCGGCGG--CGCG- -5'
14619 5' -62.2 NC_003521.1 + 119160 0.71 0.501892
Target:  5'- gCCCUC-CGAGgaaacaGGCCGgCGCGCa -3'
miRNA:   3'- aGGGAGaGCUCagac--CCGGCgGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 120837 0.68 0.640525
Target:  5'- aUCCUcCUCGGGUgccaugCUGgacucggccuugaGGCgGCCGCGCg -3'
miRNA:   3'- -AGGGaGAGCUCA------GAC-------------CCGgCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 121874 0.67 0.734784
Target:  5'- aCUgUCUCGGGcgCUGGcccugacgggacGCCGCCGCcCa -3'
miRNA:   3'- aGGgAGAGCUCa-GACC------------CGGCGGCGcG- -5'
14619 5' -62.2 NC_003521.1 + 124235 0.71 0.501892
Target:  5'- gCCCgauUC-CGaAGggUUGGGUCGCCGCGCg -3'
miRNA:   3'- aGGG---AGaGC-UCa-GACCCGGCGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.